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The map label for this gene is ydcM [C]

Identifier: 160903059

GI number: 160903059

Start: 1777179

End: 1778312

Strand: Direct

Name: ydcM [C]

Synonym: Pmob_1623

Alternate gene names: 160903059

Gene position: 1777179-1778312 (Clockwise)

Preceding gene: 160903058

Following gene: 160903060

Centisome position: 81.91

GC content: 31.66

Gene sequence:

>1134_bases
ATGCTAATAACATACAGGTTTAGGTTGTACCCAACTAACGAACAAATACATAAACTTAACGAACACTTTGGACATGCTAG
GTTTGTATACAACCTTTTCTTAGAATTTGCTAACAATGCATATAAGAATACTAAAACGTTAACTAATTACTATATGTGGT
GTAAAGTATTAGCAACTCTTAAAAAAACCGAGAAATATCAATGGCTAAACGATGCCAATTCTCAATCTTTACAACAGTCC
ATAAAGAACTTAGAAACTGGATTCAAACGTTTCTTCAAGAAACAAAGTAAATACCCCAAATTTAAGAAAAAATCAAGTAG
ACAATCTTTTAGAGTTCCTCAACATATACAACTGTATGAAAATGAAAATAACGATAAATACGGTATTCTATTTGTACCAA
AGTTTAAAGAAGGTATAAAAGTAAGAGTACATAGAAAAATAGATCCAAATGCAAAGATAAAAAATTGTACTTTCATTAAA
ACTTCAACAGGTAAGTACTTTGTGTCTATAACCTTTGAAGTCGAAGGTTCTTACCTTGAAAGAGATATAGACTACGAAAA
CGCAATCGGTATGGATATGGGACTTAAAGATTTTGTTGTATTATCCGATGGAACGAAGTATCCAGCTCTTAAAGTATTGT
CTAAGTACGAAAGGAAACTAAAACATGCATATAAAAAGTTTTCAAGTAAAGAAAAAGGGTCAAAGAATTGGGACAAAGCA
AAATTAGAAGTTGCTAGAATACATGAGAAAATAAAAAATACACGAGAGGATTTTCTGCATAAACTAACAAAAGAAATCAG
TGAGAACCAAGCTGATCTCTTTGTTGTAGAAACTCTCAATATAAGAGGCATGTTAAAGAATCACCACTTAGCTAAAAGTA
TCTCAGATTCAGGATGGTATCAATTCAAAACGTTCCTAAAATACAAAGCAGAGAGATTAGGTAAAAAGGTAATCGAAATA
GGAATGTTTGAACCTTCGTCTAAGACTTGTAGTGTATGTGGGTATAAGAATGAAGGTTTAAAACTTTCTGATAGAGAATG
GGTATGTCCTGAATGTGGAACTAAACATGATAGAGATATAAATGCTGCTGTTAACATTAGGCAGTTTGGGTTAAAACAGG
CATTCGTTATATAG

Upstream 100 bases:

>100_bases
TGAGGTAAATGTATAATATTTAAGGTATTAAAAGTTAGTTACAATGCGTGTTTTAAAGTTTCTAAAAGGACTAAATACAC
ATTATATCAGGAGAATTAAA

Downstream 100 bases:

>100_bases
CCCTACGGCAGATAAGGAAACAGCTAGTCACTGTATAAACAGACTCTACCCCAGGAACTGGGGGATGTTAAGCCTTTGGA
GACTGTGTAAGTCGAGCACC

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MLITYRFRLYPTNEQIHKLNEHFGHARFVYNLFLEFANNAYKNTKTLTNYYMWCKVLATLKKTEKYQWLNDANSQSLQQS
IKNLETGFKRFFKKQSKYPKFKKKSSRQSFRVPQHIQLYENENNDKYGILFVPKFKEGIKVRVHRKIDPNAKIKNCTFIK
TSTGKYFVSITFEVEGSYLERDIDYENAIGMDMGLKDFVVLSDGTKYPALKVLSKYERKLKHAYKKFSSKEKGSKNWDKA
KLEVARIHEKIKNTREDFLHKLTKEISENQADLFVVETLNIRGMLKNHHLAKSISDSGWYQFKTFLKYKAERLGKKVIEI
GMFEPSSKTCSVCGYKNEGLKLSDREWVCPECGTKHDRDINAAVNIRQFGLKQAFVI

Sequences:

>Translated_377_residues
MLITYRFRLYPTNEQIHKLNEHFGHARFVYNLFLEFANNAYKNTKTLTNYYMWCKVLATLKKTEKYQWLNDANSQSLQQS
IKNLETGFKRFFKKQSKYPKFKKKSSRQSFRVPQHIQLYENENNDKYGILFVPKFKEGIKVRVHRKIDPNAKIKNCTFIK
TSTGKYFVSITFEVEGSYLERDIDYENAIGMDMGLKDFVVLSDGTKYPALKVLSKYERKLKHAYKKFSSKEKGSKNWDKA
KLEVARIHEKIKNTREDFLHKLTKEISENQADLFVVETLNIRGMLKNHHLAKSISDSGWYQFKTFLKYKAERLGKKVIEI
GMFEPSSKTCSVCGYKNEGLKLSDREWVCPECGTKHDRDINAAVNIRQFGLKQAFVI
>Mature_377_residues
MLITYRFRLYPTNEQIHKLNEHFGHARFVYNLFLEFANNAYKNTKTLTNYYMWCKVLATLKKTEKYQWLNDANSQSLQQS
IKNLETGFKRFFKKQSKYPKFKKKSSRQSFRVPQHIQLYENENNDKYGILFVPKFKEGIKVRVHRKIDPNAKIKNCTFIK
TSTGKYFVSITFEVEGSYLERDIDYENAIGMDMGLKDFVVLSDGTKYPALKVLSKYERKLKHAYKKFSSKEKGSKNWDKA
KLEVARIHEKIKNTREDFLHKLTKEISENQADLFVVETLNIRGMLKNHHLAKSISDSGWYQFKTFLKYKAERLGKKVIEI
GMFEPSSKTCSVCGYKNEGLKLSDREWVCPECGTKHDRDINAAVNIRQFGLKQAFVI

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=364, Percent_Identity=32.6923076923077, Blast_Score=182, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44378; Mature: 44378

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLITYRFRLYPTNEQIHKLNEHFGHARFVYNLFLEFANNAYKNTKTLTNYYMWCKVLATL
CEEEEEEEEECCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
KKTEKYQWLNDANSQSLQQSIKNLETGFKRFFKKQSKYPKFKKKSSRQSFRVPQHIQLYE
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEEE
NENNDKYGILFVPKFKEGIKVRVHRKIDPNAKIKNCTFIKTSTGKYFVSITFEVEGSYLE
CCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEEEECCCHHH
RDIDYENAIGMDMGLKDFVVLSDGTKYPALKVLSKYERKLKHAYKKFSSKEKGSKNWDKA
CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
KLEVARIHEKIKNTREDFLHKLTKEISENQADLFVVETLNIRGMLKNHHLAKSISDSGWY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCHH
QFKTFLKYKAERLGKKVIEIGMFEPSSKTCSVCGYKNEGLKLSDREWVCPECGTKHDRDI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCC
NAAVNIRQFGLKQAFVI
HHEEEHHHHCCHHHHCC
>Mature Secondary Structure
MLITYRFRLYPTNEQIHKLNEHFGHARFVYNLFLEFANNAYKNTKTLTNYYMWCKVLATL
CEEEEEEEEECCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
KKTEKYQWLNDANSQSLQQSIKNLETGFKRFFKKQSKYPKFKKKSSRQSFRVPQHIQLYE
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEEE
NENNDKYGILFVPKFKEGIKVRVHRKIDPNAKIKNCTFIKTSTGKYFVSITFEVEGSYLE
CCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEEEECCCHHH
RDIDYENAIGMDMGLKDFVVLSDGTKYPALKVLSKYERKLKHAYKKFSSKEKGSKNWDKA
CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
KLEVARIHEKIKNTREDFLHKLTKEISENQADLFVVETLNIRGMLKNHHLAKSISDSGWY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCHH
QFKTFLKYKAERLGKKVIEIGMFEPSSKTCSVCGYKNEGLKLSDREWVCPECGTKHDRDI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCC
NAAVNIRQFGLKQAFVI
HHEEEHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]