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The map label for this gene is ysmB [H]

Identifier: 160901506

GI number: 160901506

Start: 12618

End: 13055

Strand: Direct

Name: ysmB [H]

Synonym: Pmob_0015

Alternate gene names: 160901506

Gene position: 12618-13055 (Clockwise)

Preceding gene: 160901502

Following gene: 160901507

Centisome position: 0.58

GC content: 30.82

Gene sequence:

>438_bases
ATGGAAAATAACCCTTCAATTCAAATGGAAAAGATGATTAGAGAGATTTGCTCAAAAGTAAAAAGTGAAGGAAGAAAAGT
TTTAAAAGAGTTCAACATTTCTCCGGCTCAGTTTGATGTTTTGCAAACCGTTTATTTCAAAGGTCCTAAAATGCTCAGTG
ACATCAGTAAAAGATTGGGGGTAACAAAAAGCACAACAACTGGACTCATTAGAAGATTGGAAATTGCAGGATATTTGGTT
AGGGAAAAATCAAAGAAGGATAAAAGGGTATATGTTGTTCAAATTACTCAAGACGGGACTAATATAATAGAAAACGTGAT
AAAAAACAGGGTAATATTGATGGAAAAAGTATATGAAAAATTGGGAGAAAAAGAAAGAAGTGTAGAAATATTAAATGAAA
TCAATAAAATTTTGAATGAAAATCAAGGTGGGATATAA

Upstream 100 bases:

>100_bases
GATTTTTCAAGAATATGATATACTATATTAGATATTGCGTTTTGATCATGACTGAATCCAGAAAATTAGAGAAATACTTC
ATAATCTGGGGAGGAATAAA

Downstream 100 bases:

>100_bases
CAGTGTATAGAAGGTTTTTAGTGTTTCTCGTATTAATCTTTACAACATTTCTTTTTTCTTACACAATAAATCTAATAGCA
TTACCTGGTAGTGAAGTTTA

Product: transcriptional regulator TrmB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MENNPSIQMEKMIREICSKVKSEGRKVLKEFNISPAQFDVLQTVYFKGPKMLSDISKRLGVTKSTTTGLIRRLEIAGYLV
REKSKKDKRVYVVQITQDGTNIIENVIKNRVILMEKVYEKLGEKERSVEILNEINKILNENQGGI

Sequences:

>Translated_145_residues
MENNPSIQMEKMIREICSKVKSEGRKVLKEFNISPAQFDVLQTVYFKGPKMLSDISKRLGVTKSTTTGLIRRLEIAGYLV
REKSKKDKRVYVVQITQDGTNIIENVIKNRVILMEKVYEKLGEKERSVEILNEINKILNENQGGI
>Mature_145_residues
MENNPSIQMEKMIREICSKVKSEGRKVLKEFNISPAQFDVLQTVYFKGPKMLSDISKRLGVTKSTTTGLIRRLEIAGYLV
REKSKKDKRVYVVQITQDGTNIIENVIKNRVILMEKVYEKLGEKERSVEILNEINKILNENQGGI

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16674; Mature: 16674

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENNPSIQMEKMIREICSKVKSEGRKVLKEFNISPAQFDVLQTVYFKGPKMLSDISKRLG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHC
VTKSTTTGLIRRLEIAGYLVREKSKKDKRVYVVQITQDGTNIIENVIKNRVILMEKVYEK
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
LGEKERSVEILNEINKILNENQGGI
HCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MENNPSIQMEKMIREICSKVKSEGRKVLKEFNISPAQFDVLQTVYFKGPKMLSDISKRLG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHC
VTKSTTTGLIRRLEIAGYLVREKSKKDKRVYVVQITQDGTNIIENVIKNRVILMEKVYEK
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
LGEKERSVEILNEINKILNENQGGI
HCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]