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The map label for this gene is deoC [H]

Identifier: 160901500

GI number: 160901500

Start: 6976

End: 7725

Strand: Direct

Name: deoC [H]

Synonym: Pmob_0009

Alternate gene names: 160901500

Gene position: 6976-7725 (Clockwise)

Preceding gene: 160901497

Following gene: 160901502

Centisome position: 0.32

GC content: 32.8

Gene sequence:

>750_bases
ATGAGAATTTCAGAATTAGAAAAGATCATTAAAACCGAAATAAAAAGAGTAGAAAATGAATTTACTTTTGAAGAAAGACA
GGCAAACTTAAAACCTTACGAGGTATCAAAATATATTGATCATACCATGCTTAAAGCCACCTCAACACCTTTAGATATAC
AAGCATTATGTAAAGAAGCTAAAGATAACAATTTCTATGCGGTTTGCATTAATCCAACTTATGTAAGTTTATCAAAAGAA
GTCCTTACAGATAGTGAAGTAAAAGTAGCAACAGTAATTGGGTTCCCTTTGGGAGCCAATACTATAGAAACAAAAGTTTA
TGAATCTGAGAATTCGATTAAAGATGGCGCTGATGAATTAGATATGGTTTTGAATATAGGGAGACTTAAAGCACAACAGT
ACGATTATATTTATGATGAAATACATGCTATTTCCTCATTGACTAAAGATTCCAAAAAACTATTAAAAGTTATTATTGAA
ACTTGCTACCTTTCGAAGGAAGAAAAAATAGCCGCTGTTGTAATTTCAAAACTAGCTGGTGCAGATTTTGTTAAAACCTC
TACAGGCTTTGGAAGTGGAGGTGCTGAATTAGAGGACGTGGCATTGATGAAGTTCCTCTCAGGAAATGGAATGAAAGTAA
AAGCATCTGGAGGCATTAGAGACTTGAAAACAGCTTTAAAAATGATAGGTTGTGGAGCAGATAGAATAGGAACCAGTTCA
GGATTAAAGATAATTCAAGAAAGTATATAA

Upstream 100 bases:

>100_bases
CTTTCAAACTTATTATATCACATTTTTTTAAAATATGATAAAATATTTTAGAAATTATTTTTGTAAAACAATCTTATTAT
TTAAGGAAAGGGGTTAAAAA

Downstream 100 bases:

>100_bases
ATAAAGGAGCACTTTCGCGCTCCTTGGTGTATTTTGGGTTTAGATTATGGTATACACTTATAAGGGTTATAAGGGTCTTA
CATTTGAAGCTTGAGGTCCT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MRISELEKIIKTEIKRVENEFTFEERQANLKPYEVSKYIDHTMLKATSTPLDIQALCKEAKDNNFYAVCINPTYVSLSKE
VLTDSEVKVATVIGFPLGANTIETKVYESENSIKDGADELDMVLNIGRLKAQQYDYIYDEIHAISSLTKDSKKLLKVIIE
TCYLSKEEKIAAVVISKLAGADFVKTSTGFGSGGAELEDVALMKFLSGNGMKVKASGGIRDLKTALKMIGCGADRIGTSS
GLKIIQESI

Sequences:

>Translated_249_residues
MRISELEKIIKTEIKRVENEFTFEERQANLKPYEVSKYIDHTMLKATSTPLDIQALCKEAKDNNFYAVCINPTYVSLSKE
VLTDSEVKVATVIGFPLGANTIETKVYESENSIKDGADELDMVLNIGRLKAQQYDYIYDEIHAISSLTKDSKKLLKVIIE
TCYLSKEEKIAAVVISKLAGADFVKTSTGFGSGGAELEDVALMKFLSGNGMKVKASGGIRDLKTALKMIGCGADRIGTSS
GLKIIQESI
>Mature_249_residues
MRISELEKIIKTEIKRVENEFTFEERQANLKPYEVSKYIDHTMLKATSTPLDIQALCKEAKDNNFYAVCINPTYVSLSKE
VLTDSEVKVATVIGFPLGANTIETKVYESENSIKDGADELDMVLNIGRLKAQQYDYIYDEIHAISSLTKDSKKLLKVIIE
TCYLSKEEKIAAVVISKLAGADFVKTSTGFGSGGAELEDVALMKFLSGNGMKVKASGGIRDLKTALKMIGCGADRIGTSS
GLKIIQESI

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=227, Percent_Identity=29.5154185022026, Blast_Score=80, Evalue=1e-15,
Organism=Escherichia coli, GI1790841, Length=212, Percent_Identity=33.4905660377358, Blast_Score=87, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17533015, Length=237, Percent_Identity=29.957805907173, Blast_Score=77, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 27368; Mature: 27368

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRISELEKIIKTEIKRVENEFTFEERQANLKPYEVSKYIDHTMLKATSTPLDIQALCKEA
CCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHC
KDNNFYAVCINPTYVSLSKEVLTDSEVKVATVIGFPLGANTIETKVYESENSIKDGADEL
CCCCEEEEEECCCEEHHHHHHHCCCCEEEEEEEECCCCCCHHHHEEECCCCCCCCCHHHH
DMVLNIGRLKAQQYDYIYDEIHAISSLTKDSKKLLKVIIETCYLSKEEKIAAVVISKLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
ADFVKTSTGFGSGGAELEDVALMKFLSGNGMKVKASGGIRDLKTALKMIGCGADRIGTSS
CCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCHHCCCHH
GLKIIQESI
HHHHHHHCC
>Mature Secondary Structure
MRISELEKIIKTEIKRVENEFTFEERQANLKPYEVSKYIDHTMLKATSTPLDIQALCKEA
CCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHC
KDNNFYAVCINPTYVSLSKEVLTDSEVKVATVIGFPLGANTIETKVYESENSIKDGADEL
CCCCEEEEEECCCEEHHHHHHHCCCCEEEEEEEECCCCCCHHHHEEECCCCCCCCCHHHH
DMVLNIGRLKAQQYDYIYDEIHAISSLTKDSKKLLKVIIETCYLSKEEKIAAVVISKLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
ADFVKTSTGFGSGGAELEDVALMKFLSGNGMKVKASGGIRDLKTALKMIGCGADRIGTSS
CCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCHHCCCHH
GLKIIQESI
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]