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The map label for this gene is kdkA [H]

Identifier: 160877578

GI number: 160877578

Start: 5289048

End: 5289803

Strand: Direct

Name: kdkA [H]

Synonym: Sbal195_4477

Alternate gene names: 160877578

Gene position: 5289048-5289803 (Clockwise)

Preceding gene: 160877574

Following gene: 160877580

Centisome position: 98.91

GC content: 49.21

Gene sequence:

>756_bases
ATGAATGCTCAGATACAGCTCATAAAAACCGCCCAAGGTCACATGGCAGTTTGCCAAAATACGCCAACAGATATCGATCC
CGCGTGGTTCTCGGTGGATTTTTGGCGGGCTAAAAATGCTGTCGTCGGTTCATCAAAAGGCCGTTACACCACTTGGTTTG
TGGCATTTGAGCACAGTCATTGGGTATTGCGGCATTATTGGCGTGGCGGCTTAATGGAGAAATTCAGCAAAGACGCTTAC
GTTTATACTGGCCTCGAAAATACCCGCGCCATGGGTGAGTTACACTTATTAAACATTTTGTATCACGAAGATTTTGCCGT
ACCTAAGCCGATTGCCGCCAACATAGTACGCGATGGATTATTTTACCGCGCCGATATCATTATCGAACGGGTCGAAGGCG
CCGAAGATTTAGTCGCTAAACTCGGCAAAGGGGTCATGAGCACAGAGCAATGGCAGGCGTTGGGAGCAACTATCGCCCAA
TTCCACCTGCGCGGTGTGTACCACGCCGATCTCAATGCCAAAAACATTCTGTTCCAGCCTGCGCAAACAGCACCCATAAC
GGCAGAACGCTTTTATCTTATCGATTTCGACCGCGGTGAGTTAAAAACACCGAGCCCGCAATGGCAGCAATCGAATCTAG
ACAGACTGTTACGCTCCTTTAATAAAGAACAAGGCAAACTGCCAAACCTTGCCTTCACTGCCGATAACTGGTCATCACTA
CTGCTGGGCTACCAAGCGGCGATGCAAAGCGCCTGA

Upstream 100 bases:

>100_bases
ATTGGGATTGAAGCTAAAAGCTCTTAAGGTTATTTGGCGCAAGCTAAGGATCTTAATGTAGAATGGCCCTAGGTGCCACG
CTTAAGTCAACAAATCTCCC

Downstream 100 bases:

>100_bases
ACCACTAAATAAATTATCTTGTTGAATTAATTGATTAATGATTGCGCGAGAAGAAATTGTCGTTGCAAGGCACCGCGATT
TGCCTCAACCACTGCCAATC

Product: 3-deoxy-D-manno-octulosonic-acid kinase

Products: NA

Alternate protein names: KDO kinase [H]

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MNAQIQLIKTAQGHMAVCQNTPTDIDPAWFSVDFWRAKNAVVGSSKGRYTTWFVAFEHSHWVLRHYWRGGLMEKFSKDAY
VYTGLENTRAMGELHLLNILYHEDFAVPKPIAANIVRDGLFYRADIIIERVEGAEDLVAKLGKGVMSTEQWQALGATIAQ
FHLRGVYHADLNAKNILFQPAQTAPITAERFYLIDFDRGELKTPSPQWQQSNLDRLLRSFNKEQGKLPNLAFTADNWSSL
LLGYQAAMQSA

Sequences:

>Translated_251_residues
MNAQIQLIKTAQGHMAVCQNTPTDIDPAWFSVDFWRAKNAVVGSSKGRYTTWFVAFEHSHWVLRHYWRGGLMEKFSKDAY
VYTGLENTRAMGELHLLNILYHEDFAVPKPIAANIVRDGLFYRADIIIERVEGAEDLVAKLGKGVMSTEQWQALGATIAQ
FHLRGVYHADLNAKNILFQPAQTAPITAERFYLIDFDRGELKTPSPQWQQSNLDRLLRSFNKEQGKLPNLAFTADNWSSL
LLGYQAAMQSA
>Mature_251_residues
MNAQIQLIKTAQGHMAVCQNTPTDIDPAWFSVDFWRAKNAVVGSSKGRYTTWFVAFEHSHWVLRHYWRGGLMEKFSKDAY
VYTGLENTRAMGELHLLNILYHEDFAVPKPIAANIVRDGLFYRADIIIERVEGAEDLVAKLGKGVMSTEQWQALGATIAQ
FHLRGVYHADLNAKNILFQPAQTAPITAERFYLIDFDRGELKTPSPQWQQSNLDRLLRSFNKEQGKLPNLAFTADNWSSL
LLGYQAAMQSA

Specific function: ATP-dependent phosphorylation of 3-deoxy-D-manno- octulosonic acid at the 4-OH position [H]

COG id: COG0515

COG function: function code RTKL; Serine/threonine protein kinase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein kinase superfamily. KdkA/rfaP family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022826
- InterPro:   IPR011009
- InterPro:   IPR010440
- InterPro:   IPR000719 [H]

Pfam domain/function: PF06293 Kdo [H]

EC number: NA

Molecular weight: Translated: 28508; Mature: 28508

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAQIQLIKTAQGHMAVCQNTPTDIDPAWFSVDFWRAKNAVVGSSKGRYTTWFVAFEHSH
CCCEEEEEEECCCCEEEECCCCCCCCCCEEEEEHHHCCCCEEECCCCCEEEEEEEEECCC
WVLRHYWRGGLMEKFSKDAYVYTGLENTRAMGELHLLNILYHEDFAVPKPIAANIVRDGL
HHHHHHHCCCHHHHHCCCCEEEECCCCCHHHHHHHEEHEEECCCCCCCCHHHHHHHHCCH
FYRADIIIERVEGAEDLVAKLGKGVMSTEQWQALGATIAQFHLRGVYHADLNAKNILFQP
HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCEEEECCCCCCCEEECC
AQTAPITAERFYLIDFDRGELKTPSPQWQQSNLDRLLRSFNKEQGKLPNLAFTADNWSSL
CCCCCCEECEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCHHCCCCCCEEEECCCHHHH
LLGYQAAMQSA
HHHHHHHHCCC
>Mature Secondary Structure
MNAQIQLIKTAQGHMAVCQNTPTDIDPAWFSVDFWRAKNAVVGSSKGRYTTWFVAFEHSH
CCCEEEEEEECCCCEEEECCCCCCCCCCEEEEEHHHCCCCEEECCCCCEEEEEEEEECCC
WVLRHYWRGGLMEKFSKDAYVYTGLENTRAMGELHLLNILYHEDFAVPKPIAANIVRDGL
HHHHHHHCCCHHHHHCCCCEEEECCCCCHHHHHHHEEHEEECCCCCCCCHHHHHHHHCCH
FYRADIIIERVEGAEDLVAKLGKGVMSTEQWQALGATIAQFHLRGVYHADLNAKNILFQP
HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCEEEECCCCCCCEEECC
AQTAPITAERFYLIDFDRGELKTPSPQWQQSNLDRLLRSFNKEQGKLPNLAFTADNWSSL
CCCCCCEECEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCHHCCCCCCEEEECCCHHHH
LLGYQAAMQSA
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA