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The map label for this gene is yeaM [H]

Identifier: 160876714

GI number: 160876714

Start: 4247958

End: 4248773

Strand: Reverse

Name: yeaM [H]

Synonym: Sbal195_3608

Alternate gene names: 160876714

Gene position: 4248773-4247958 (Counterclockwise)

Preceding gene: 160876716

Following gene: 160876713

Centisome position: 79.46

GC content: 43.14

Gene sequence:

>816_bases
ATGCTAAGTCGCCAACTCGATTCGATTAACGCCATTATTGAGCAAGCGCCTAATATGCCTTCTTTTGTAAAAACGATTGA
GATGCAGAAGGGTTATGTGGATGTTTTACACCAGCACTGTTGGCATCAGCTTATTTTTCCACTTCAAGGCCTGTTACAGA
CAGAGGCAGATGGCGCACTGTTTTTAGTTCCCCATACCACAGCGCTTTTTGTGCCTGCAGGGGTGATACATGAGTCTGTT
GCGATTACTGATACCTGCTTTATTGGCGTCTATCTGAATCCTATGTGTGGTCGAGATTATGGTGCCATGATTAAACTCGT
CGCTATGAGTGCTTTTCTAAGGGAGTTAGTGTTAACACTCAGAAAACAATGTGCTTTTAATACCCCAATAAATGTTGAGC
CAATGGTTCAGGCGCCAATACTGCGTTTGCTTGAGGTGCTATACGATCAAATTAATAGTGCGGGAGGACAGACTTTTAAG
TTACTGATACCCAAAGATAGACGCCTAAAATTGATTTTTGAGCATTTAACCCAAACGCCAGCTTTAGATTTCTCTTTAGT
GAAATGGGGAGAGAGGGTTGGGGCATCGGAACGAACATTGTCGAGGCTATTTGTGAGGGAGTTTGGTTCCTCATTCGTAT
TATGGCGTCAACATTTGCGACTGATCTATTCGCTGTCGTTATTGGCCACTGACCTATCAATACAGAATGTGGCCCACCAA
ATTGGTTATCAAAATGATTCATCCTATATCAAAGCTTTCAAGGAGCGTTTTGGGATGACGCCACAGCGATTTCGGTTAGG
CGATCATGGGATATAA

Upstream 100 bases:

>100_bases
TGCAATGAATCTGCATTGAGTTTTCCTGTGTCATTTATGGGATAACGCTATGCTACAATCCTTTTTATTTGGCTGAATAA
CGTTATATGGACAAGTAATA

Downstream 100 bases:

>100_bases
TCCTGTTACGATTTATGGCGTTTAACACTGCTTTTAGTTGAATCATTTAACATTTAATCAATGCTTTGCACCTTTTGGCA
GCACAGAGATTCATTTGGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MLSRQLDSINAIIEQAPNMPSFVKTIEMQKGYVDVLHQHCWHQLIFPLQGLLQTEADGALFLVPHTTALFVPAGVIHESV
AITDTCFIGVYLNPMCGRDYGAMIKLVAMSAFLRELVLTLRKQCAFNTPINVEPMVQAPILRLLEVLYDQINSAGGQTFK
LLIPKDRRLKLIFEHLTQTPALDFSLVKWGERVGASERTLSRLFVREFGSSFVLWRQHLRLIYSLSLLATDLSIQNVAHQ
IGYQNDSSYIKAFKERFGMTPQRFRLGDHGI

Sequences:

>Translated_271_residues
MLSRQLDSINAIIEQAPNMPSFVKTIEMQKGYVDVLHQHCWHQLIFPLQGLLQTEADGALFLVPHTTALFVPAGVIHESV
AITDTCFIGVYLNPMCGRDYGAMIKLVAMSAFLRELVLTLRKQCAFNTPINVEPMVQAPILRLLEVLYDQINSAGGQTFK
LLIPKDRRLKLIFEHLTQTPALDFSLVKWGERVGASERTLSRLFVREFGSSFVLWRQHLRLIYSLSLLATDLSIQNVAHQ
IGYQNDSSYIKAFKERFGMTPQRFRLGDHGI
>Mature_271_residues
MLSRQLDSINAIIEQAPNMPSFVKTIEMQKGYVDVLHQHCWHQLIFPLQGLLQTEADGALFLVPHTTALFVPAGVIHESV
AITDTCFIGVYLNPMCGRDYGAMIKLVAMSAFLRELVLTLRKQCAFNTPINVEPMVQAPILRLLEVLYDQINSAGGQTFK
LLIPKDRRLKLIFEHLTQTPALDFSLVKWGERVGASERTLSRLFVREFGSSFVLWRQHLRLIYSLSLLATDLSIQNVAHQ
IGYQNDSSYIKAFKERFGMTPQRFRLGDHGI

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=231, Percent_Identity=32.4675324675325, Blast_Score=117, Evalue=6e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30745; Mature: 30745

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRQLDSINAIIEQAPNMPSFVKTIEMQKGYVDVLHQHCWHQLIFPLQGLLQTEADGAL
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
FLVPHTTALFVPAGVIHESVAITDTCFIGVYLNPMCGRDYGAMIKLVAMSAFLRELVLTL
EEECCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
RKQCAFNTPINVEPMVQAPILRLLEVLYDQINSAGGQTFKLLIPKDRRLKLIFEHLTQTP
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCC
ALDFSLVKWGERVGASERTLSRLFVREFGSSFVLWRQHLRLIYSLSLLATDLSIQNVAHQ
CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGYQNDSSYIKAFKERFGMTPQRFRLGDHGI
HCCCCCHHHHHHHHHHHCCCHHHHCCCCCCC
>Mature Secondary Structure
MLSRQLDSINAIIEQAPNMPSFVKTIEMQKGYVDVLHQHCWHQLIFPLQGLLQTEADGAL
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
FLVPHTTALFVPAGVIHESVAITDTCFIGVYLNPMCGRDYGAMIKLVAMSAFLRELVLTL
EEECCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
RKQCAFNTPINVEPMVQAPILRLLEVLYDQINSAGGQTFKLLIPKDRRLKLIFEHLTQTP
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCC
ALDFSLVKWGERVGASERTLSRLFVREFGSSFVLWRQHLRLIYSLSLLATDLSIQNVAHQ
CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGYQNDSSYIKAFKERFGMTPQRFRLGDHGI
HCCCCCHHHHHHHHHHHCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]