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The map label for this gene is yciR [C]

Identifier: 160876710

GI number: 160876710

Start: 4242438

End: 4243934

Strand: Reverse

Name: yciR [C]

Synonym: Sbal195_3604

Alternate gene names: 160876710

Gene position: 4243934-4242438 (Counterclockwise)

Preceding gene: 160876712

Following gene: 160876702

Centisome position: 79.37

GC content: 45.82

Gene sequence:

>1497_bases
GTGAATAATGATGGCTACACTTCCCTAAGCAATTTTATCGACCTTCTCTTGGATGCTATTTGCGTCGTCGATAAAGATGG
GCGGTTTGAATTTGTCAGTGCCGGGGCAGAACGCATTTTTGGCTATACCCCAGAAGAAATGATTGGCATGCAGATGCTCG
ATCTTGTTATTCCTGAGGATAGAGAGCGCACACTCGCAACCGCCAATGAGATTATGACTGGCCGCTATAAGGTCGATTTC
GAAAACCGTTATGTGCGTAAAGACGGCGTCATTGTCGATATTTTGTGGTCCGCACGCTGGTCCGATGCTTACCAACAACG
CGTCGCGGTCGCCAGAGATATCTCTAAGAGTAAAAACGCCGAACGCAGACAAGCTGCACTGTATGAGATTTCTGAAGCTG
TGCATGTCGCTGAGGATTTGCTAGCCCTATATCGCCGTATCCATGAAATCATTGCTAAATTGCTGCCCGCGGCAAACTTT
GCCATCGCATTGTACGATCAAGATTTAAATGAACTCAGTTTCCCTTACAAAGCCGCTGCGGGTGATAATTCACTGGTCGA
TATTGCAAGTTTCAGCTTGTTTACCGAACAAGTGATCCACAGTGCAGAATCTTTACTCCTGTGTCCCGTGACCTTATCTG
AGTATCCCCAAGCCATTCGTGAAGAGCTGGGTAATGGCAATTTAAGTTGGTTGGGTGTGCCGCTAAAGCTGCAAAAAGGT
GTTATCGGTGCCTTGATGATGCATAGCTTGCCCACTTCGGCTTCTTATACGCACCAAGACCGTGAGCTATTGGAGTTTGT
TTCTACGCAAATTGCCTTTGCGATTGAACGCCGACAAATGCTTGCGCGATTAGAGCATATTGCGCTGTATGATCAGCTAA
CCCTGTTGCCCAATCGCGAGCTTTTTTACGACAGGTTTCAAAAGGCGCTATCCCGAGCCCATAGGGAATCAAGTTATTTC
TCTTTACTTTATTTAGATTTAGATAAGTTTAAGTGGGTAAACGATACCTTTGGTCATAGTGTGGGCGATTTATTGCTGCA
AGTGACAGCACAACGTATTGTCAGCTGTGTAAGGGGCTCAGATACCGTAGCGCGTTTTGGGGGCGACGAGTTTGTCATCT
TACTCGAGCGCGTTGATTCGGCACAAAATACCCTGTTGGCAGCGCAAAAAATATTACAAGTGCTCAATCAACCCTTTGAG
CTTACCGATCAGCAAATCCATATTTTACCGAGTATCGGTATTGCCCTGTATCCAGAGCACGGCACGGATGAAAAACAGTT
ACTTTCCTGTGCGGATGCAGCCATGTATAAGGCTAAGAAAAATGGGGGCAATCGCATTGAAATGGGTTATCAAGGGCTGA
GAAATCTGCATGCAGATCCTCTGACTGCGGCTCCTGAGTTAAAGAGCGCTGAGTTAAAAGACACTGAGTTAGAAGACCGT
GAATTAAAAGACACTGAGTTAAATAACCTTGAAAACAAGGTGACTAAGATAGTGTGA

Upstream 100 bases:

>100_bases
CATTGAAAATTAACCTACTCTAATAGTGCGTTATTACTATTTTTATGCTTATGATCGAGTTTAAGACTTAGCCAAAGACA
GACGTTTATTGGAGAACTGC

Downstream 100 bases:

>100_bases
GTTTGATTGAGACGTTCAAGCGCAAGAGTTTGAATTACTGGAATGTGTAAAGAAATGCCCGCGAATGTCAGTGACATTAG
CGGGCATTATTGTATGTAGC

Product: PAS/PAC sensor-containing diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MNNDGYTSLSNFIDLLLDAICVVDKDGRFEFVSAGAERIFGYTPEEMIGMQMLDLVIPEDRERTLATANEIMTGRYKVDF
ENRYVRKDGVIVDILWSARWSDAYQQRVAVARDISKSKNAERRQAALYEISEAVHVAEDLLALYRRIHEIIAKLLPAANF
AIALYDQDLNELSFPYKAAAGDNSLVDIASFSLFTEQVIHSAESLLLCPVTLSEYPQAIREELGNGNLSWLGVPLKLQKG
VIGALMMHSLPTSASYTHQDRELLEFVSTQIAFAIERRQMLARLEHIALYDQLTLLPNRELFYDRFQKALSRAHRESSYF
SLLYLDLDKFKWVNDTFGHSVGDLLLQVTAQRIVSCVRGSDTVARFGGDEFVILLERVDSAQNTLLAAQKILQVLNQPFE
LTDQQIHILPSIGIALYPEHGTDEKQLLSCADAAMYKAKKNGGNRIEMGYQGLRNLHADPLTAAPELKSAELKDTELEDR
ELKDTELNNLENKVTKIV

Sequences:

>Translated_498_residues
MNNDGYTSLSNFIDLLLDAICVVDKDGRFEFVSAGAERIFGYTPEEMIGMQMLDLVIPEDRERTLATANEIMTGRYKVDF
ENRYVRKDGVIVDILWSARWSDAYQQRVAVARDISKSKNAERRQAALYEISEAVHVAEDLLALYRRIHEIIAKLLPAANF
AIALYDQDLNELSFPYKAAAGDNSLVDIASFSLFTEQVIHSAESLLLCPVTLSEYPQAIREELGNGNLSWLGVPLKLQKG
VIGALMMHSLPTSASYTHQDRELLEFVSTQIAFAIERRQMLARLEHIALYDQLTLLPNRELFYDRFQKALSRAHRESSYF
SLLYLDLDKFKWVNDTFGHSVGDLLLQVTAQRIVSCVRGSDTVARFGGDEFVILLERVDSAQNTLLAAQKILQVLNQPFE
LTDQQIHILPSIGIALYPEHGTDEKQLLSCADAAMYKAKKNGGNRIEMGYQGLRNLHADPLTAAPELKSAELKDTELEDR
ELKDTELNNLENKVTKIV
>Mature_498_residues
MNNDGYTSLSNFIDLLLDAICVVDKDGRFEFVSAGAERIFGYTPEEMIGMQMLDLVIPEDRERTLATANEIMTGRYKVDF
ENRYVRKDGVIVDILWSARWSDAYQQRVAVARDISKSKNAERRQAALYEISEAVHVAEDLLALYRRIHEIIAKLLPAANF
AIALYDQDLNELSFPYKAAAGDNSLVDIASFSLFTEQVIHSAESLLLCPVTLSEYPQAIREELGNGNLSWLGVPLKLQKG
VIGALMMHSLPTSASYTHQDRELLEFVSTQIAFAIERRQMLARLEHIALYDQLTLLPNRELFYDRFQKALSRAHRESSYF
SLLYLDLDKFKWVNDTFGHSVGDLLLQVTAQRIVSCVRGSDTVARFGGDEFVILLERVDSAQNTLLAAQKILQVLNQPFE
LTDQQIHILPSIGIALYPEHGTDEKQLLSCADAAMYKAKKNGGNRIEMGYQGLRNLHADPLTAAPELKSAELKDTELEDR
ELKDTELNNLENKVTKIV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=168, Percent_Identity=40.4761904761905, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=38.125, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1788381, Length=174, Percent_Identity=35.632183908046, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1786584, Length=188, Percent_Identity=31.9148936170213, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI87081881, Length=175, Percent_Identity=35.4285714285714, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1787816, Length=157, Percent_Identity=35.031847133758, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788956, Length=160, Percent_Identity=37.5, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1787262, Length=225, Percent_Identity=28.4444444444444, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI87081977, Length=224, Percent_Identity=26.3392857142857, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787802, Length=169, Percent_Identity=31.3609467455621, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082007, Length=166, Percent_Identity=34.9397590361446, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=32.9192546583851, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1788085, Length=165, Percent_Identity=27.8787878787879, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787056, Length=165, Percent_Identity=35.1515151515151, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 56213; Mature: 56213

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNDGYTSLSNFIDLLLDAICVVDKDGRFEFVSAGAERIFGYTPEEMIGMQMLDLVIPED
CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHCHHHHCCCCHHHHHHHHHHHHHCCCC
RERTLATANEIMTGRYKVDFENRYVRKDGVIVDILWSARWSDAYQQRVAVARDISKSKNA
CHHHHHHHHHHHCCCEEEECCCCEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCH
ERRQAALYEISEAVHVAEDLLALYRRIHEIIAKLLPAANFAIALYDQDLNELSFPYKAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCEECC
GDNSLVDIASFSLFTEQVIHSAESLLLCPVTLSEYPQAIREELGNGNLSWLGVPLKLQKG
CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHH
VIGALMMHSLPTSASYTHQDRELLEFVSTQIAFAIERRQMLARLEHIALYDQLTLLPNRE
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
LFYDRFQKALSRAHRESSYFSLLYLDLDKFKWVNDTFGHSVGDLLLQVTAQRIVSCVRGS
HHHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHCCC
DTVARFGGDEFVILLERVDSAQNTLLAAQKILQVLNQPFELTDQQIHILPSIGIALYPEH
CHHHHCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEECCCC
GTDEKQLLSCADAAMYKAKKNGGNRIEMGYQGLRNLHADPLTAAPELKSAELKDTELEDR
CCCHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
ELKDTELNNLENKVTKIV
CCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNNDGYTSLSNFIDLLLDAICVVDKDGRFEFVSAGAERIFGYTPEEMIGMQMLDLVIPED
CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHCHHHHCCCCHHHHHHHHHHHHHCCCC
RERTLATANEIMTGRYKVDFENRYVRKDGVIVDILWSARWSDAYQQRVAVARDISKSKNA
CHHHHHHHHHHHCCCEEEECCCCEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCH
ERRQAALYEISEAVHVAEDLLALYRRIHEIIAKLLPAANFAIALYDQDLNELSFPYKAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCEECC
GDNSLVDIASFSLFTEQVIHSAESLLLCPVTLSEYPQAIREELGNGNLSWLGVPLKLQKG
CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHH
VIGALMMHSLPTSASYTHQDRELLEFVSTQIAFAIERRQMLARLEHIALYDQLTLLPNRE
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
LFYDRFQKALSRAHRESSYFSLLYLDLDKFKWVNDTFGHSVGDLLLQVTAQRIVSCVRGS
HHHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHCCC
DTVARFGGDEFVILLERVDSAQNTLLAAQKILQVLNQPFELTDQQIHILPSIGIALYPEH
CHHHHCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEECCCC
GTDEKQLLSCADAAMYKAKKNGGNRIEMGYQGLRNLHADPLTAAPELKSAELKDTELEDR
CCCHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
ELKDTELNNLENKVTKIV
CCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]