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The map label for this gene is prtR [H]

Identifier: 160876601

GI number: 160876601

Start: 4114500

End: 4115189

Strand: Direct

Name: prtR [H]

Synonym: Sbal195_3495

Alternate gene names: 160876601

Gene position: 4114500-4115189 (Clockwise)

Preceding gene: 160876590

Following gene: 160876604

Centisome position: 76.95

GC content: 45.65

Gene sequence:

>690_bases
ATGATGAATGAACGCATTAAACAAAGACGCAAAGAGCTAGGTTTTACACAGCCAGCCATTGCAAAAAAAATAGGCTTAAC
TAAAGCCACAGTATCGCTTTGGGAATCAGGCTCTACCTCTCCCAAAGGCGAGAACCTGCATGCCTTAGCGAAAGCCTTAA
GTTGCTCACCCGAATATCTTCTCTTTGGAAATAAAGAAACTAAACCGGAATCCAACGCTGAATGGGCTGGCGGTTTTGAG
ATATGGGACAGTGATACCCCATTAGGGGAAGATGAAGTTGAAATACCGTTTTACATGGAAGTAGAGCTAGCCGCAGGGGA
TGGCATTCTCGATAGCCGCGAATTTAAAGGGCCAAAACTGCGCTTTACTAAGAGCACTCTTAAACGTCAAGGTGTGAATA
GTGACTATGCAGCATGTGTCAAAGTGAATGGCAACAGCATGGAGCCCATATTACCCCACGGCTCAACAGTCGGCGTCGAT
ACCTCGGCCACCGATGTGATCGACGGCAAAATGTACGCCGTGAACCACGATGGCATGCTGCGCATCAAAGTACTGTATAA
ATTACCCGGTGGTGGTTTACGCCTACGCAGCTACAACACTGACGAATATCCTGATGAACGCCTCGATACTGACCAAGTCA
AACAGATCAAAGTGATCGGAAAAGTATTTTGGTATTCAGTTTTAATTTAA

Upstream 100 bases:

>100_bases
AACTCCGACAAGTAATTTTAACCGAGGTTAAGAAAACTCAACTCAAATGTCAACAAAAGAAAAGGTAACTTGACTTACGT
TAAGTTAAGATAGCTTTACT

Downstream 100 bases:

>100_bases
AATAAACTATCAAATAAATTAAGCCAGAACTAACAACATCTGGCTTAAAATTAAAATACACAAGGAAAACTCGTAAATCA
TTAGTTGTTCATTGATCTAT

Product: putative phage repressor

Products: NA

Alternate protein names: Pyocin repressor protein [H]

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MMNERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGSTSPKGENLHALAKALSCSPEYLLFGNKETKPESNAEWAGGFE
IWDSDTPLGEDEVEIPFYMEVELAAGDGILDSREFKGPKLRFTKSTLKRQGVNSDYAACVKVNGNSMEPILPHGSTVGVD
TSATDVIDGKMYAVNHDGMLRIKVLYKLPGGGLRLRSYNTDEYPDERLDTDQVKQIKVIGKVFWYSVLI

Sequences:

>Translated_229_residues
MMNERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGSTSPKGENLHALAKALSCSPEYLLFGNKETKPESNAEWAGGFE
IWDSDTPLGEDEVEIPFYMEVELAAGDGILDSREFKGPKLRFTKSTLKRQGVNSDYAACVKVNGNSMEPILPHGSTVGVD
TSATDVIDGKMYAVNHDGMLRIKVLYKLPGGGLRLRSYNTDEYPDERLDTDQVKQIKVIGKVFWYSVLI
>Mature_229_residues
MMNERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGSTSPKGENLHALAKALSCSPEYLLFGNKETKPESNAEWAGGFE
IWDSDTPLGEDEVEIPFYMEVELAAGDGILDSREFKGPKLRFTKSTLKRQGVNSDYAACVKVNGNSMEPILPHGSTVGVD
TSATDVIDGKMYAVNHDGMLRIKVLYKLPGGGLRLRSYNTDEYPDERLDTDQVKQIKVIGKVFWYSVLI

Specific function: Represses the promoter activity of the prtN gene [H]

COG id: COG2932

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787853, Length=66, Percent_Identity=46.969696969697, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 25422; Mature: 25422

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGSTSPKGENLHALAKALSCSPEYL
CCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEE
LFGNKETKPESNAEWAGGFEIWDSDTPLGEDEVEIPFYMEVELAAGDGILDSREFKGPKL
EECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEE
RFTKSTLKRQGVNSDYAACVKVNGNSMEPILPHGSTVGVDTSATDVIDGKMYAVNHDGML
EEEHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEECCCCCCCEEECCEEEEECCCCEE
RIKVLYKLPGGGLRLRSYNTDEYPDERLDTDQVKQIKVIGKVFWYSVLI
EEEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMNERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGSTSPKGENLHALAKALSCSPEYL
CCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEE
LFGNKETKPESNAEWAGGFEIWDSDTPLGEDEVEIPFYMEVELAAGDGILDSREFKGPKL
EECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEE
RFTKSTLKRQGVNSDYAACVKVNGNSMEPILPHGSTVGVDTSATDVIDGKMYAVNHDGML
EEEHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEECCCCCCCEEECCEEEEECCCCEE
RIKVLYKLPGGGLRLRSYNTDEYPDERLDTDQVKQIKVIGKVFWYSVLI
EEEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8444788; 10984043 [H]