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The map label for this gene is secD [H]

Identifier: 160876534

GI number: 160876534

Start: 4045758

End: 4047572

Strand: Reverse

Name: secD [H]

Synonym: Sbal195_3428

Alternate gene names: 160876534

Gene position: 4047572-4045758 (Counterclockwise)

Preceding gene: 160876535

Following gene: 160876533

Centisome position: 75.69

GC content: 49.09

Gene sequence:

>1815_bases
ATGGAAAGAAAACCCAATAAACGGCTGCTAAATCACTATTCAGCTTGGAAATATATAGTTCTTATCGTCACCATCATTGT
GATGTTATTCAGTGCCTTGCCGACATTTTATGGTGAGGATGCCGCGGTGCAAGTGGGCGCTAAGGCGGGGTTAACACTCA
CGCCCGTAGCCCTTAGAGATAAGCTGCAAGCTGAAGGCGTGACGGTAAAACGCATCGACCAAAAGAATGGTGAAACCCTG
ATTGTCCTCGATGCGGATAACCAACAAACCTTAGTCAAAACCTTGGTTTCGTCTATGGTGACAGAGCCCAAAGAGTTGAC
CTTATCCCTTGCCAGTGCCGCGCCGAGTTGGTTGCAAAACTTAGGTTTTCAGCCGATTAAACTAGGGCTCGACTTACGTG
GTGGGGTGCAGTTTCTACTCGATGTGGATGTTGACCCTGTGTATCAAACTCAGGGTGAGGCGTTAGTTGATTCGCTACGT
CAATTCATTCGTGAGCAGAAGATCCGTGGCGCCAGCGTCTATTTGGACCAAACTAACCAGTTAAACCTGACGCTGCCCGA
TAATGACGCCCGCGCCGCCGTGCGTCAGATGATGAAACAGTCCTATCCAAATTGGCAATTATCCAATACCGATGGCGCGG
GTTTACAGATTAAGTTGAGCCAAGAGGAACAAACTAAACTGCGTAATTTGACTGTGCAGCAAAACCTGCAAGTTATGCGC
AGTCGTATTGAAGAACTTGGCATAACAGAAGCCTTAGTACAGCGCCAAGGCGATCATCGAATTCGGATTGAGTTGCCTGG
CGTGCAAGATCCTGCAGCCGCGAAAAACGTCATTGGTGCTACAGCGAGTCTGGCTTTTTTCGAGGTGAAAGAGTCAGGCT
CTGTGAATGCCATGGTGCTTAACGATAAGTCGGGTAAGCCTATTTATGTGAGCCGCACGCCTGTGCTGGGTGGCGATCAC
ATTGTCGATGCCAGAGCGAGTTTAGGTGAGATGGGTATGGCCGAGGTAAACATTAACCTCGACCGTATCGGCGGGCAGAA
AATGTCTGAGTTTTCCCGAACCAATATTGGCAAACCTATGGCGACGTCTTACAGCGAATACAGTCGCGATGAACTAGGTA
AGGCTAAGCAAACTCAAGAGATTATCAGCGTTGCGACCATTCAATCCCAGCTTGGAGACCGCTTCCGCATCACTGGCGCT
GGCACCTATCAAGAAGCGCAGCAATTAGCCCTGTTACTAAGAGCGGGTTCTATGACGGCGCCAGTGACGATTGTGGAAGA
GCGTACCATTGGCCCGACGTTAGGCGCTGAAAACATTGAAAACGGTTTTGCTGCGCTTGGTCTAGGTATGGGCATTACCT
TGTTGTTCATGGCGCTTTGGTATCGTCGTCTCGGTTGGGTGGCGAATATCGCGCTGATCTCTAACATGGTGATCTTGTTT
GGCCTACTGGCGCTTATCCCTGGTGCTGTGCTGACCTTGCCCGGTATTGCTGGCCTAGTGTTAACCGTGGGTATGGCTGT
CGATACCAACGTGCTGATTTTTGAGCGAATAAAAGACAAGTTAAAAGAAGGTCGCAGCTTTGCGCTGGCAATTGATACGG
GGTTTGATAGTGCGTTTTCGACCATTTTTGACGCTAACTTCACCACTATGATCACGGCTGTCGTGCTGTATTCCATCGGT
AATGGCCCAATTCAAGGTTTCGCCTTGACCTTAGGTCTAGGTCTGTTGACCAGCATGTTTACCGGTATCTTTGCTTCAAG
AGCCTTGATTAACTTAGTTTACGGACGTGATGCTAGTCGTCATGTGAGGGTATAA

Upstream 100 bases:

>100_bases
GCTAGATTTGCTGGTGCTCAATGATAGGTTTCGGACTGATATCAATATGTTCGCTTAGCTTTTGATTTAAAAGTTAGGTG
ATAAATAGCGAGTTAATCCC

Downstream 100 bases:

>100_bases
CCATGAAAAATATCAATCTAACAAAATGGCGTTATGTCTCAAGTGCTATCTCAATTTTATTGATGATAACGTCATTAGCC
ATCATAGGTGTAAAGGGTTT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MERKPNKRLLNHYSAWKYIVLIVTIIVMLFSALPTFYGEDAAVQVGAKAGLTLTPVALRDKLQAEGVTVKRIDQKNGETL
IVLDADNQQTLVKTLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGEALVDSLR
QFIREQKIRGASVYLDQTNQLNLTLPDNDARAAVRQMMKQSYPNWQLSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMR
SRIEELGITEALVQRQGDHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAMVLNDKSGKPIYVSRTPVLGGDH
IVDARASLGEMGMAEVNINLDRIGGQKMSEFSRTNIGKPMATSYSEYSRDELGKAKQTQEIISVATIQSQLGDRFRITGA
GTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILF
GLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIG
NGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVRV

Sequences:

>Translated_604_residues
MERKPNKRLLNHYSAWKYIVLIVTIIVMLFSALPTFYGEDAAVQVGAKAGLTLTPVALRDKLQAEGVTVKRIDQKNGETL
IVLDADNQQTLVKTLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGEALVDSLR
QFIREQKIRGASVYLDQTNQLNLTLPDNDARAAVRQMMKQSYPNWQLSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMR
SRIEELGITEALVQRQGDHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAMVLNDKSGKPIYVSRTPVLGGDH
IVDARASLGEMGMAEVNINLDRIGGQKMSEFSRTNIGKPMATSYSEYSRDELGKAKQTQEIISVATIQSQLGDRFRITGA
GTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILF
GLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIG
NGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVRV
>Mature_604_residues
MERKPNKRLLNHYSAWKYIVLIVTIIVMLFSALPTFYGEDAAVQVGAKAGLTLTPVALRDKLQAEGVTVKRIDQKNGETL
IVLDADNQQTLVKTLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGEALVDSLR
QFIREQKIRGASVYLDQTNQLNLTLPDNDARAAVRQMMKQSYPNWQLSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMR
SRIEELGITEALVQRQGDHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAMVLNDKSGKPIYVSRTPVLGGDH
IVDARASLGEMGMAEVNINLDRIGGQKMSEFSRTNIGKPMATSYSEYSRDELGKAKQTQEIISVATIQSQLGDRFRITGA
GTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILF
GLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIG
NGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVRV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=606, Percent_Identity=42.7392739273927, Blast_Score=501, Evalue=1e-143,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 65747; Mature: 65747

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERKPNKRLLNHYSAWKYIVLIVTIIVMLFSALPTFYGEDAAVQVGAKAGLTLTPVALRD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEECHHHHHH
KLQAEGVTVKRIDQKNGETLIVLDADNQQTLVKTLVSSMVTEPKELTLSLASAAPSWLQN
HHHHCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHH
LGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGEALVDSLRQFIREQKIRGASVYLDQTNQ
CCCCEEEECEEECCCEEEEEECCCCCCHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCE
LNLTLPDNDARAAVRQMMKQSYPNWQLSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMR
EEEEECCCHHHHHHHHHHHHCCCCCEECCCCCCCEEEEECCHHHHHHHHCHHHHHHHHHH
SRIEELGITEALVQRQGDHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAMVL
HHHHHCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCHHHEEEEEEECCCCEEEEEE
NDKSGKPIYVSRTPVLGGDHIVDARASLGEMGMAEVNINLDRIGGQKMSEFSRTNIGKPM
ECCCCCEEEEECCCCCCCCCEECCHHHHCCCCEEEEEEEHHHCCCHHHHHHHHHCCCCCC
ATSYSEYSRDELGKAKQTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTA
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCC
PVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILF
CEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFS
HHHHHHCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHH
TIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASR
HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
HVRV
CCCC
>Mature Secondary Structure
MERKPNKRLLNHYSAWKYIVLIVTIIVMLFSALPTFYGEDAAVQVGAKAGLTLTPVALRD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEECHHHHHH
KLQAEGVTVKRIDQKNGETLIVLDADNQQTLVKTLVSSMVTEPKELTLSLASAAPSWLQN
HHHHCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHH
LGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGEALVDSLRQFIREQKIRGASVYLDQTNQ
CCCCEEEECEEECCCEEEEEECCCCCCHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCE
LNLTLPDNDARAAVRQMMKQSYPNWQLSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMR
EEEEECCCHHHHHHHHHHHHCCCCCEECCCCCCCEEEEECCHHHHHHHHCHHHHHHHHHH
SRIEELGITEALVQRQGDHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAMVL
HHHHHCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCHHHEEEEEEECCCCEEEEEE
NDKSGKPIYVSRTPVLGGDHIVDARASLGEMGMAEVNINLDRIGGQKMSEFSRTNIGKPM
ECCCCCEEEEECCCCCCCCCEECCHHHHCCCCEEEEEEEHHHCCCHHHHHHHHHCCCCCC
ATSYSEYSRDELGKAKQTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTA
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCC
PVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILF
CEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFS
HHHHHHCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHH
TIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASR
HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
HVRV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]