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The map label for this gene is rbfA [H]

Identifier: 160876522

GI number: 160876522

Start: 4032092

End: 4032565

Strand: Reverse

Name: rbfA [H]

Synonym: Sbal195_3416

Alternate gene names: 160876522

Gene position: 4032565-4032092 (Counterclockwise)

Preceding gene: 160876523

Following gene: 160876521

Centisome position: 75.41

GC content: 45.78

Gene sequence:

>474_bases
ATGGTAAGAAATATTATGGCAAAAGAATTCAGTCGTACTCGTCGAATCGCTCAGCAGCTTCAGCAAGAACTTGCTCAAGT
GCTACAGCGCGACATGAAAGATCCTCGTATTGGCTTTGTAACCGTGAATGACGTCGATGTCTCACGCGACCTTAGCTATG
CCAAAGTCTTCGTGACTTTCTTCGAGGAAGACAAAGCCGTTGTTCAAGAAAAGCTAAACGCTTTGATCAGCGCCGCTCCT
TATATCCGCACTTTAGTGGCGGGCCGTATGAAGCTGCGTGTGATGCCTGAACTGCGTTTTATCTATGATAGCTCGCTCGT
TGAAGGTATGCGCATGTCTAACTTAGTTAGCCAAGTGATCAACCAAGACAAAGCGAAGCAGCAGCAATTTGGTAGCGAAG
AGGCATCAGTTGAAGATGAAGTCTTAGGTGATGATGTTGCCGATGATGCAGATGAAACGGAAGGTAAAGATTAA

Upstream 100 bases:

>100_bases
TCGCGTAGGCGACCAAATCGAAGTATTCGAAACCGTCGAGATTGCTCGTACTCTGTAACGATAATAAGGGCGGCTTTAGC
CGCCCTTATCAATTTAAGCT

Downstream 100 bases:

>100_bases
TGGCTCGTCGTCCAAAAGGTCGTTTTATTGATGGGATAGTGCTGCTGGATAAATCCACTGGCATGAGTTCTAACTTTGCA
TTGCAAAGGGTAAAGCGCTT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MVRNIMAKEFSRTRRIAQQLQQELAQVLQRDMKDPRIGFVTVNDVDVSRDLSYAKVFVTFFEEDKAVVQEKLNALISAAP
YIRTLVAGRMKLRVMPELRFIYDSSLVEGMRMSNLVSQVINQDKAKQQQFGSEEASVEDEVLGDDVADDADETEGKD

Sequences:

>Translated_157_residues
MVRNIMAKEFSRTRRIAQQLQQELAQVLQRDMKDPRIGFVTVNDVDVSRDLSYAKVFVTFFEEDKAVVQEKLNALISAAP
YIRTLVAGRMKLRVMPELRFIYDSSLVEGMRMSNLVSQVINQDKAKQQQFGSEEASVEDEVLGDDVADDADETEGKD
>Mature_157_residues
MVRNIMAKEFSRTRRIAQQLQQELAQVLQRDMKDPRIGFVTVNDVDVSRDLSYAKVFVTFFEEDKAVVQEKLNALISAAP
YIRTLVAGRMKLRVMPELRFIYDSSLVEGMRMSNLVSQVINQDKAKQQQFGSEEASVEDEVLGDDVADDADETEGKD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=124, Percent_Identity=52.4193548387097, Blast_Score=136, Evalue=7e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 17866; Mature: 17866

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRNIMAKEFSRTRRIAQQLQQELAQVLQRDMKDPRIGFVTVNDVDVSRDLSYAKVFVTF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHCHHHHHHHHHH
FEEDKAVVQEKLNALISAAPYIRTLVAGRMKLRVMPELRFIYDSSLVEGMRMSNLVSQVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQDKAKQQQFGSEEASVEDEVLGDDVADDADETEGKD
HHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVRNIMAKEFSRTRRIAQQLQQELAQVLQRDMKDPRIGFVTVNDVDVSRDLSYAKVFVTF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHCHHHHHHHHHH
FEEDKAVVQEKLNALISAAPYIRTLVAGRMKLRVMPELRFIYDSSLVEGMRMSNLVSQVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQDKAKQQQFGSEEASVEDEVLGDDVADDADETEGKD
HHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA