| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is ypwA [H]
Identifier: 160876361
GI number: 160876361
Start: 3830605
End: 3832110
Strand: Direct
Name: ypwA [H]
Synonym: Sbal195_3255
Alternate gene names: 160876361
Gene position: 3830605-3832110 (Clockwise)
Preceding gene: 160876357
Following gene: 160876362
Centisome position: 71.64
GC content: 51.86
Gene sequence:
>1506_bases ATGGGCACACCTAAGACTAAAGTACCAACGCCAAGTTACGACAAACTGACGGCACATTTCCAGAAAATTTCTCACTTTGA ACATTTCAGCGCTTTGGCTGACTGGGATCAAGCGGCCATGATGCCGATGGGCGGTGGTCCAGATCGCGGCGATGCAATGG CAGAACTGGCGCTGCATATCCACGGTCTCAAAACCTCAGACACCTTAGCCGAGCACTTACACTGCGCGGCGGACGAATCT CTCTCAACAGAGCAAGAAGCCAATCTGCGGGCAATACTGTACCAGTATCAACAGGCCAACTTAGTGCCAGGCGACCTAGT ACAAGCCAAAACCAAGATGGCCTATCAATGTGAGAATGCGTGGCGCGAGCAGCGTAAAAATAATGATTGGCTGGGCTTTA AGCCCAATCTAAAAGCGGTCATCGACCTTGCCAAGGAAGAAGCGCAGATCCGCGGCGAAGCGCAAAATATCACGCCCTAT GATGCCCTGCTCAATAAATTTGAACCGGGAATGACCACGGCAAAGCTAGAGCAAACCTTTGGCGGCCTGAAAGATTGGCT ACCGACACTCATCCAAGAAGTGCTGACTAAGCAGGCAAACGAGCCTAAGCTTGTGCTCAACGGCCCCTTCGATATCAGCG CGCAGCAAGCCCTTGGCCGTGACGTCATGGCGTTTTTGGGGTTTGACTTTAATCATGGCAGGCTGGATATGAGTAGCCAT CCATTTTGTGGCGGCGTGCCAAGCGATGTGCGGATAACGACCCGCTACAATGAGGCCGATTTCAGTAGCGCTATCATGGG CATAGTTCATGAAACTGGCCACGCCAGATACGAGCAAGGTTTACCTCAAGCGTGGCGCGGCCAACCCGCTGGGCTTGCAC GTTCTATGGGCGTCCACGAAAGCCAAAGTCTATTTTGCGAAATGCAGCTTGGGGCAAATCCGGCATTTTTACGCCAGTTG CAGCCTAAAATCGCGCAGCATCTTAACTGTCATGTCAGCGCCCAAGAATTAGCCCAGCATTATACCCGCGTGAATCCCGG ACTTATTCGCGTCGACGCCGACGAAGTCACCTATCCTTGCCACATTTTGCTGCGGTTTGAGGCAGAAAAAGCCTTTGTCG ATGGCAGCTTAACCGTCGATGATTTACCTGATTTTTGGTCGACGCAGATGCAACAATTACTGGGGATCAATACTGATGGC AATTACCGCGACGGTTGCATGCAGGACATCCATTGGGCTGTCGGTGAGCTAGGGTATTTCCCAAGTTACACCTTAGGCGC CATGTATGCCGCCCAATGTCGTTTTGCGATGGAAAAAGCCTTAGGGCCGATTGAAGCCCTAATCGATGCAGGCAAGTTGG ACTCGGTATTCCAGTGGCTGCGCGAGCACATTTGGTCAAAGGGATCCTTGCTCACGACCGATGAACTGATCCGCCAAGCA ACGGGCGAAACCTTAAATGGTCAATATCTTGAGCGTCACCTGCGTCAACGATATCTGGGCATTTAA
Upstream 100 bases:
>100_bases CCTTTAGCGTTTTAGTGCTATATGATTTTGACTTCATTGTATTATCATCCTGTTATTGTTATTTATTCGCGCAGGTTTTA TGCGCCAGAAGGGAAATCCC
Downstream 100 bases:
>100_bases CCGCTGCTGACACATAAAAGCACTGAAAGCTCAGTTTATACGGGTTTTAAAGCGCTTTATATTGCCGCTGGAGCCTGCAT TTTGAAGCCGCTTGAGGTTA
Product: carboxypeptidase Taq
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 501; Mature: 500
Protein sequence:
>501_residues MGTPKTKVPTPSYDKLTAHFQKISHFEHFSALADWDQAAMMPMGGGPDRGDAMAELALHIHGLKTSDTLAEHLHCAADES LSTEQEANLRAILYQYQQANLVPGDLVQAKTKMAYQCENAWREQRKNNDWLGFKPNLKAVIDLAKEEAQIRGEAQNITPY DALLNKFEPGMTTAKLEQTFGGLKDWLPTLIQEVLTKQANEPKLVLNGPFDISAQQALGRDVMAFLGFDFNHGRLDMSSH PFCGGVPSDVRITTRYNEADFSSAIMGIVHETGHARYEQGLPQAWRGQPAGLARSMGVHESQSLFCEMQLGANPAFLRQL QPKIAQHLNCHVSAQELAQHYTRVNPGLIRVDADEVTYPCHILLRFEAEKAFVDGSLTVDDLPDFWSTQMQQLLGINTDG NYRDGCMQDIHWAVGELGYFPSYTLGAMYAAQCRFAMEKALGPIEALIDAGKLDSVFQWLREHIWSKGSLLTTDELIRQA TGETLNGQYLERHLRQRYLGI
Sequences:
>Translated_501_residues MGTPKTKVPTPSYDKLTAHFQKISHFEHFSALADWDQAAMMPMGGGPDRGDAMAELALHIHGLKTSDTLAEHLHCAADES LSTEQEANLRAILYQYQQANLVPGDLVQAKTKMAYQCENAWREQRKNNDWLGFKPNLKAVIDLAKEEAQIRGEAQNITPY DALLNKFEPGMTTAKLEQTFGGLKDWLPTLIQEVLTKQANEPKLVLNGPFDISAQQALGRDVMAFLGFDFNHGRLDMSSH PFCGGVPSDVRITTRYNEADFSSAIMGIVHETGHARYEQGLPQAWRGQPAGLARSMGVHESQSLFCEMQLGANPAFLRQL QPKIAQHLNCHVSAQELAQHYTRVNPGLIRVDADEVTYPCHILLRFEAEKAFVDGSLTVDDLPDFWSTQMQQLLGINTDG NYRDGCMQDIHWAVGELGYFPSYTLGAMYAAQCRFAMEKALGPIEALIDAGKLDSVFQWLREHIWSKGSLLTTDELIRQA TGETLNGQYLERHLRQRYLGI >Mature_500_residues GTPKTKVPTPSYDKLTAHFQKISHFEHFSALADWDQAAMMPMGGGPDRGDAMAELALHIHGLKTSDTLAEHLHCAADESL STEQEANLRAILYQYQQANLVPGDLVQAKTKMAYQCENAWREQRKNNDWLGFKPNLKAVIDLAKEEAQIRGEAQNITPYD ALLNKFEPGMTTAKLEQTFGGLKDWLPTLIQEVLTKQANEPKLVLNGPFDISAQQALGRDVMAFLGFDFNHGRLDMSSHP FCGGVPSDVRITTRYNEADFSSAIMGIVHETGHARYEQGLPQAWRGQPAGLARSMGVHESQSLFCEMQLGANPAFLRQLQ PKIAQHLNCHVSAQELAQHYTRVNPGLIRVDADEVTYPCHILLRFEAEKAFVDGSLTVDDLPDFWSTQMQQLLGINTDGN YRDGCMQDIHWAVGELGYFPSYTLGAMYAAQCRFAMEKALGPIEALIDAGKLDSVFQWLREHIWSKGSLLTTDELIRQAT GETLNGQYLERHLRQRYLGI
Specific function: Unknown
COG id: COG2317
COG function: function code E; Zn-dependent carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M32 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001333 [H]
Pfam domain/function: PF02074 Peptidase_M32 [H]
EC number: NA
Molecular weight: Translated: 56035; Mature: 55904
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTPKTKVPTPSYDKLTAHFQKISHFEHFSALADWDQAAMMPMGGGPDRGDAMAELALHI CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHH HGLKTSDTLAEHLHCAADESLSTEQEANLRAILYQYQQANLVPGDLVQAKTKMAYQCENA CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH WREQRKNNDWLGFKPNLKAVIDLAKEEAQIRGEAQNITPYDALLNKFEPGMTTAKLEQTF HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHH GGLKDWLPTLIQEVLTKQANEPKLVLNGPFDISAQQALGRDVMAFLGFDFNHGRLDMSSH CHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCC PFCGGVPSDVRITTRYNEADFSSAIMGIVHETGHARYEQGLPQAWRGQPAGLARSMGVHE CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHCCCHHHCCCCCHHHHHCCCCC SQSLFCEMQLGANPAFLRQLQPKIAQHLNCHVSAQELAQHYTRVNPGLIRVDADEVTYPC CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCE HILLRFEAEKAFVDGSLTVDDLPDFWSTQMQQLLGINTDGNYRDGCMQDIHWAVGELGYF EEEEEEECCHHEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC PSYTLGAMYAAQCRFAMEKALGPIEALIDAGKLDSVFQWLREHIWSKGSLLTTDELIRQA CCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCEECHHHHHHHH TGETLNGQYLERHLRQRYLGI CCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure GTPKTKVPTPSYDKLTAHFQKISHFEHFSALADWDQAAMMPMGGGPDRGDAMAELALHI CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHH HGLKTSDTLAEHLHCAADESLSTEQEANLRAILYQYQQANLVPGDLVQAKTKMAYQCENA CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH WREQRKNNDWLGFKPNLKAVIDLAKEEAQIRGEAQNITPYDALLNKFEPGMTTAKLEQTF HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHH GGLKDWLPTLIQEVLTKQANEPKLVLNGPFDISAQQALGRDVMAFLGFDFNHGRLDMSSH CHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCC PFCGGVPSDVRITTRYNEADFSSAIMGIVHETGHARYEQGLPQAWRGQPAGLARSMGVHE CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHCCCHHHCCCCCHHHHHCCCCC SQSLFCEMQLGANPAFLRQLQPKIAQHLNCHVSAQELAQHYTRVNPGLIRVDADEVTYPC CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCE HILLRFEAEKAFVDGSLTVDDLPDFWSTQMQQLLGINTDGNYRDGCMQDIHWAVGELGYF EEEEEEECCHHEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC PSYTLGAMYAAQCRFAMEKALGPIEALIDAGKLDSVFQWLREHIWSKGSLLTTDELIRQA CCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCEECHHHHHHHH TGETLNGQYLERHLRQRYLGI CCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]