Click here to switch to the map view.

The map label for this gene is yrkO [H]

Identifier: 160876336

GI number: 160876336

Start: 3798331

End: 3799566

Strand: Direct

Name: yrkO [H]

Synonym: Sbal195_3230

Alternate gene names: 160876336

Gene position: 3798331-3799566 (Clockwise)

Preceding gene: 160876335

Following gene: 160876337

Centisome position: 71.03

GC content: 44.66

Gene sequence:

>1236_bases
ATGCCTACTAGCGAAAGGAACTCAGCTAACGTGCCAGCCAACTTACCTAAAGATCCTTGGTCAAGAACAGACTCCACGCA
GCCAGTCGTAATGGCGATTCCTGCACAGCGTAATGCCAACCTCGATGCCATTCGCGGCTTAGCCGTATTGGGGATATTTT
TTATGAATATCTATTTTATGGGCATTACTTTTTTTGGCTATGCCCCCCACGAAACGCCGCCGCTGTCGGATCACATAATC
AAAGTGTTCAGTAACTTTTTCATCGAGGCGCGCTTTATCAGTCTGTTTTCCATCTTGTTTGGCGTCGGGCTTTTTATTCA
ATATCAGCGATTTAGCGCCAAAGGCCTAGAAGCATATCCTTTACTGCGCTCACGTTTGAAATGGCTAATGGTGTTTGGCT
TACTCCACGGCATCATTATCTGGCCTGGTGATATTTTATTAACCTATGGGATCAGCGGATTTTTAGCTTTGTGTTACAAA
GATTTAAGTATTGAAGCCCTTAAGCGCAAAGCGAATATTTTTATTTTAAGCGCCTTAGTGATCATCACGCTGATTAGCCT
TACGGGCAGCGATGAACCTTTCACTCGAGAATCGAGTCTATTTGCAGAGCAATACAGCGCATGGACCTCAGGCTATGCTG
ATCAACTGTTCCTGCATTTGATGCAAGTGGGTTATATGGCGCTGGTGATCCCTTTTACCATAATGTGGTTTACTGCGGGC
TTGATGCTGCTTGGCATGGCCTTGTATCAACAGGGGACTTTTGAGCGGGGTTTTAGCAAGCCACAACTGCTGAAATTAGT
GCTAGCCAGCGTGACGGTATCGCTACTCGATACCGGTTTAGACTTTACGAACAATCCTATTCTAGTCACGTTTTCAGATG
TGTTAATCATGCTAAGCGCTATTCCTATGGCGCTGATTTACATTCATATTATGGTTAAAATTTGCCAAAATAATCCTAAT
AGACTCACACCACTGCAAAATGTTGGCAAACTCGCCTTTAGCCTCTACATTCTGCAATCCATCGTTGGCGTGTTAGTGTT
TAGGCACTTCGCCCCCGAATTGCTATTGAGTCTAGACAGATGGGGATACATGGCCATGGCACTGGTTTACTCAGTAGTGC
AATTACTGTTAGCCAGCCTGTACTTACGCTATTTCAAGCAAGGGCCATTAGAAAAACTTTGGCGCCACCTCGCGTTTAAA
AAATACGCGGCATCACAAGAACACAAGCAAGCTTAA

Upstream 100 bases:

>100_bases
TTGCTATCTTTTTTGTATTTCACTTTTTGTATTGGCTGTATTTCATTGGGGGCTAGCGCCTGCTAGGCTAGCCCTCCCAA
ATCCCAGTGAAAAGTCGAAC

Downstream 100 bases:

>100_bases
AAACACTGACACGAGATTGATACCAGATAATGACGAACAAAAAACCGGCCAAAACGGGCAACAGCGCTTCACCTCAAACA
AATCGTGCTCAAAAGAGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MPTSERNSANVPANLPKDPWSRTDSTQPVVMAIPAQRNANLDAIRGLAVLGIFFMNIYFMGITFFGYAPHETPPLSDHII
KVFSNFFIEARFISLFSILFGVGLFIQYQRFSAKGLEAYPLLRSRLKWLMVFGLLHGIIIWPGDILLTYGISGFLALCYK
DLSIEALKRKANIFILSALVIITLISLTGSDEPFTRESSLFAEQYSAWTSGYADQLFLHLMQVGYMALVIPFTIMWFTAG
LMLLGMALYQQGTFERGFSKPQLLKLVLASVTVSLLDTGLDFTNNPILVTFSDVLIMLSAIPMALIYIHIMVKICQNNPN
RLTPLQNVGKLAFSLYILQSIVGVLVFRHFAPELLLSLDRWGYMAMALVYSVVQLLLASLYLRYFKQGPLEKLWRHLAFK
KYAASQEHKQA

Sequences:

>Translated_411_residues
MPTSERNSANVPANLPKDPWSRTDSTQPVVMAIPAQRNANLDAIRGLAVLGIFFMNIYFMGITFFGYAPHETPPLSDHII
KVFSNFFIEARFISLFSILFGVGLFIQYQRFSAKGLEAYPLLRSRLKWLMVFGLLHGIIIWPGDILLTYGISGFLALCYK
DLSIEALKRKANIFILSALVIITLISLTGSDEPFTRESSLFAEQYSAWTSGYADQLFLHLMQVGYMALVIPFTIMWFTAG
LMLLGMALYQQGTFERGFSKPQLLKLVLASVTVSLLDTGLDFTNNPILVTFSDVLIMLSAIPMALIYIHIMVKICQNNPN
RLTPLQNVGKLAFSLYILQSIVGVLVFRHFAPELLLSLDRWGYMAMALVYSVVQLLLASLYLRYFKQGPLEKLWRHLAFK
KYAASQEHKQA
>Mature_410_residues
PTSERNSANVPANLPKDPWSRTDSTQPVVMAIPAQRNANLDAIRGLAVLGIFFMNIYFMGITFFGYAPHETPPLSDHIIK
VFSNFFIEARFISLFSILFGVGLFIQYQRFSAKGLEAYPLLRSRLKWLMVFGLLHGIIIWPGDILLTYGISGFLALCYKD
LSIEALKRKANIFILSALVIITLISLTGSDEPFTRESSLFAEQYSAWTSGYADQLFLHLMQVGYMALVIPFTIMWFTAGL
MLLGMALYQQGTFERGFSKPQLLKLVLASVTVSLLDTGLDFTNNPILVTFSDVLIMLSAIPMALIYIHIMVKICQNNPNR
LTPLQNVGKLAFSLYILQSIVGVLVFRHFAPELLLSLDRWGYMAMALVYSVVQLLLASLYLRYFKQGPLEKLWRHLAFKK
YAASQEHKQA

Specific function: Involved in transport (Potential) [H]

COG id: COG2311

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788475, Length=385, Percent_Identity=28.3116883116883, Blast_Score=109, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007349 [H]

Pfam domain/function: PF04235 DUF418 [H]

EC number: NA

Molecular weight: Translated: 46385; Mature: 46253

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS00136 SUBTILASE_ASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTSERNSANVPANLPKDPWSRTDSTQPVVMAIPAQRNANLDAIRGLAVLGIFFMNIYFM
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
GITFFGYAPHETPPLSDHIIKVFSNFFIEARFISLFSILFGVGLFIQYQRFSAKGLEAYP
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LLRSRLKWLMVFGLLHGIIIWPGDILLTYGISGFLALCYKDLSIEALKRKANIFILSALV
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IITLISLTGSDEPFTRESSLFAEQYSAWTSGYADQLFLHLMQVGYMALVIPFTIMWFTAG
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMLLGMALYQQGTFERGFSKPQLLKLVLASVTVSLLDTGLDFTNNPILVTFSDVLIMLSA
HHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHH
IPMALIYIHIMVKICQNNPNRLTPLQNVGKLAFSLYILQSIVGVLVFRHFAPELLLSLDR
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGYMAMALVYSVVQLLLASLYLRYFKQGPLEKLWRHLAFKKYAASQEHKQA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure 
PTSERNSANVPANLPKDPWSRTDSTQPVVMAIPAQRNANLDAIRGLAVLGIFFMNIYFM
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH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HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]