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The map label for this gene is ybfL [H]

Identifier: 160876188

GI number: 160876188

Start: 3650429

End: 3650785

Strand: Reverse

Name: ybfL [H]

Synonym: Sbal195_3080

Alternate gene names: 160876188

Gene position: 3650785-3650429 (Counterclockwise)

Preceding gene: 160876189

Following gene: 160876187

Centisome position: 68.27

GC content: 51.82

Gene sequence:

>357_bases
ATGAAAGCAGTGCATCGTCTGACCGAGGGGAAGGTTGTGGCGATTGACGGCAAAACGCTACGGGGTACCTATAACCATGA
CGACCGATATAGCACCATTCATATGGTCAGTGCCTATGCTTCGGCCAACCAGCTGGTGTTGGGACAATTGAAAACCGACA
GCAAGAGCAATGAAATCACCGCTATCCCGGCACTTATTCAGATGCTCGCTCTCCGTGGCGCCTTGGTCACCGTTGATGCC
ATGGCCTGTCAGACCAAAATTGCAAAAGCCATCATCAGCCAAGGTGGTGATTACTGGTTGTCAAGGGCAATCAAGGCAAA
CGGCGAAAGCCATCAGGACGGTGTTCGAGTCGTATAG

Upstream 100 bases:

>100_bases
GCAAAAATTGTTTGAGAATAGCTTGCCTGTTGATGACACCTTTGCCCACCTGGTCGCCGCTATCGATCCAAAAGCTTTTC
GCGAGAGTTTTCTCGCTTGA

Downstream 100 bases:

>100_bases
TCAGGCGCCAATAGATCACCAGAAATGGCAGACCGAGAAGCGCCACGGACGAGTCGTCCTTGGCGCCAAGCAACTGGAGA
GGAATTTCTCTACCTGGAAA

Product: transposase IS4 family protein

Products: NA

Alternate protein names: H repeat-associated protein in rhsC-phrB intergenic region; ORF-H2 [H]

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MKAVHRLTEGKVVAIDGKTLRGTYNHDDRYSTIHMVSAYASANQLVLGQLKTDSKSNEITAIPALIQMLALRGALVTVDA
MACQTKIAKAIISQGGDYWLSRAIKANGESHQDGVRVV

Sequences:

>Translated_118_residues
MKAVHRLTEGKVVAIDGKTLRGTYNHDDRYSTIHMVSAYASANQLVLGQLKTDSKSNEITAIPALIQMLALRGALVTVDA
MACQTKIAKAIISQGGDYWLSRAIKANGESHQDGVRVV
>Mature_118_residues
MKAVHRLTEGKVVAIDGKTLRGTYNHDDRYSTIHMVSAYASANQLVLGQLKTDSKSNEITAIPALIQMLALRGALVTVDA
MACQTKIAKAIISQGGDYWLSRAIKANGESHQDGVRVV

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

Organism=Escherichia coli, GI1787733, Length=107, Percent_Identity=50.4672897196262, Blast_Score=112, Evalue=5e-27,
Organism=Escherichia coli, GI1789896, Length=98, Percent_Identity=52.0408163265306, Blast_Score=111, Evalue=1e-26,
Organism=Escherichia coli, GI1786924, Length=107, Percent_Identity=47.6635514018692, Blast_Score=104, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 12738; Mature: 12738

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAVHRLTEGKVVAIDGKTLRGTYNHDDRYSTIHMVSAYASANQLVLGQLKTDSKSNEIT
CCCHHHCCCCCEEEECCCEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCEE
AIPALIQMLALRGALVTVDAMACQTKIAKAIISQGGDYWLSRAIKANGESHQDGVRVV
HHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEECC
>Mature Secondary Structure
MKAVHRLTEGKVVAIDGKTLRGTYNHDDRYSTIHMVSAYASANQLVLGQLKTDSKSNEIT
CCCHHHCCCCCEEEECCCEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCEE
AIPALIQMLALRGALVTVDAMACQTKIAKAIISQGGDYWLSRAIKANGESHQDGVRVV
HHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8387990; 8905232; 9278503 [H]