| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is yjbH [H]
Identifier: 160876118
GI number: 160876118
Start: 3576554
End: 3578917
Strand: Direct
Name: yjbH [H]
Synonym: Sbal195_3009
Alternate gene names: 160876118
Gene position: 3576554-3578917 (Clockwise)
Preceding gene: 160876117
Following gene: 160876124
Centisome position: 66.89
GC content: 43.95
Gene sequence:
>2364_bases ATGAAAAAGTCTAGCCACTCAATCCATACCTTAGGTCGATTATCTGCACTGTCTTTGGCATTATTACCATTAGTCCAGGT AACTGCAGATGAGTTTTCTTATCCAACACTGTTAGCCTCGCAATCAGATTTTGGTGGTGTTGGTTTAATACAAATGCCCA CAGGTCGTATGGCGCCTGAAGGCGAGTTTAATTTTGCCACTAGCTATAATGACGACTACCAACACTTTACTGCCTCAGTA CAACTTTTTCCTTGGTTTGAGACCACAGTACGTTATACGCAGGTACAGGATTTACTCTATAGCAGCGATCCCAATTTCAG TGGTAACACTAAATACACAGATAAAGGTATTGACTTTAAAGTTCGGTTACTTGAAGAAACAAACTGGCTCCCAGAAACAT CTTTCGGTGTGCGCGACTTTGGCGGAACAGGCTTGTTCGATGGCGAGTTTATTGCGGCGACCAAACGGGTTGGCCCACTA GACTTCACCTTAGGTATTGGCTGGGGCTATATCGGTAATAGCGGTAATCTGACCTCGGATAAGAAAGACCTTAATTATAA TTGTGATAGAGATACATCCGTCGGTGGCAAAGGCGGCACAGTCGATTACCAACGCTGGTTTAAGGGCTGTGCGGCACTCT TCGGTGGTGTTGAATACCAAACGCCATGGGATCCACTGCGTCTAAAGCTTGAATATGACGGCAACGATTATCAATCCGAT TACCCTGTCGTGCGTGGCCGCGATAGGAATGCTATGCCACAGGACAGCAAATTCAACTATGGTTTACTGTATCGATTTGG TGACTGGGGCGATCTTCATTTAAGTTATGAACGTGGTAACACTTGGACGCTCGGATTTAGTTTGCAAACGAATTTCAATA CCTTAACTCAAATAAAGCGCGATCCTGCAGCGGCTAAATATAAGCCAATACCAGCAGCACCATTAACGCATGTGCAAACA GCCAATATTCCATTAGATAGTGTTAGCCCTTCAGAAAATATCATTGCGACGGCTGACACCACTCTACACATCAAAGAAGA AATAGCTGACACTCATTTAATCGTTCAGCCTAAAGAAGCAATGCTAAAAACAACAATTGACTGGAATAGGGTTGCGCAGG ATCTGCAAACGATTTCAGGCTATAGCAACGCTAAAATTTACCTCGACTCTGACAGTATTACCGTGGTTGGAGAGCAAACT AAATATCGTGATAGAAATGAAGCCCACCAAAGGGCTGCCACTATACTTGCCAATAATAGCGATCTGACTCAAATCAAAGA GTATCGCTTAATTGAGACCCATTATAGCCAGCCGATTACAGAAACGCGTATTGATGCAGAAAAATTTGCCCAAGTAGCCA GCTTTGGTTACCTCAATGCTAAGGTTACTGATGCGAGTCAAGTTGTTGTCCCACGCTTACCCCAAGGTGAGTTAGTAACG CGTACTGATGCAGATTGGCTGGATAAACTAGGCTTCGATGTTGCTCCCACTATGGTGCAATCCTTCGGAGGCTCAGAAGG CTTCTACATGTTTAATATCGGTGTTACTGGGAGTGCAAACTATAAGTTTACCGATAATTTCGAATTTGGCGGTTCTCTTT ATCTCAACTTATACGATAACTACGATAAGTTTTTATATGACGTACCACCAGACGGTACCGACTTGAAACGAGTAAGAACG TTAATACGCCAGTACGTTCATGATAACCCAGTGAGAGTTAATAACCTGCAACTCACTTGGATGGACAATCTTAGTGATAA CATTTCCTACCAAGCCTATGGCGGTTATTTAGAGATGATGTATGGCGGTGTGGGGACAGAATTTCTCTATCGTCCACTCA ATAGCCAATGGGCATTTGGTTTTGATATTAACTATGCGAAACAGCGAGATCCCGATAGCATGTTTGGGTTCTTTAAGGAT GAAAATCAATTTGACCCGCTGACCAATCGTGCCTATCGAGTTCAGACTGGCGTAGTGACTGGACATGCAACGGCTTATTA CCAACCTGAGTGGTTTCCTAATACCTTACTCAGAGTGAGTGCAGGGCAGTATCTCACCGAAGATAAAGGCGTGACGGTTG ATTTCTCTAAACAGTTTGATAGTGGTGTTATCGTCGGCGCATTTGCGACTAAAACTAATCTATCGGCAGATGAATACGGT GAGGGAAGCTTTACCAAGGGATTCTATATTTCCATCCCATTCGATCTAATGACGGTTAAGTCTACCCATAGTCGTGCTTT CCTATCGTGGATGCCGTTAACCCGTGACGGCGGTCAAATGCTTGGCCGTAAGTACAACTTGTTCGATGTGACTGATGCAC GTGCGCCTTGGTATACCAAACCCAGTGTTGACCCCATTAAATAA
Upstream 100 bases:
>100_bases CCCCTGGCGCAACACTTTATGTGGAATTTTCAAGCTTATTTGATGACTACACCAAATTAAATGAAAACATTGTTGAATTA CTCAGGAATCGGGCTCTGTA
Downstream 100 bases:
>100_bases TTAGTACGCAGTAAAACCTCAAAACGGGCAAGATAATTCTTGCCCGTTTTGTTTTCTGCCATTAGGACTAACTTACAATA GTAAAATCTGCACTGCCAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 787; Mature: 787
Protein sequence:
>787_residues MKKSSHSIHTLGRLSALSLALLPLVQVTADEFSYPTLLASQSDFGGVGLIQMPTGRMAPEGEFNFATSYNDDYQHFTASV QLFPWFETTVRYTQVQDLLYSSDPNFSGNTKYTDKGIDFKVRLLEETNWLPETSFGVRDFGGTGLFDGEFIAATKRVGPL DFTLGIGWGYIGNSGNLTSDKKDLNYNCDRDTSVGGKGGTVDYQRWFKGCAALFGGVEYQTPWDPLRLKLEYDGNDYQSD YPVVRGRDRNAMPQDSKFNYGLLYRFGDWGDLHLSYERGNTWTLGFSLQTNFNTLTQIKRDPAAAKYKPIPAAPLTHVQT ANIPLDSVSPSENIIATADTTLHIKEEIADTHLIVQPKEAMLKTTIDWNRVAQDLQTISGYSNAKIYLDSDSITVVGEQT KYRDRNEAHQRAATILANNSDLTQIKEYRLIETHYSQPITETRIDAEKFAQVASFGYLNAKVTDASQVVVPRLPQGELVT RTDADWLDKLGFDVAPTMVQSFGGSEGFYMFNIGVTGSANYKFTDNFEFGGSLYLNLYDNYDKFLYDVPPDGTDLKRVRT LIRQYVHDNPVRVNNLQLTWMDNLSDNISYQAYGGYLEMMYGGVGTEFLYRPLNSQWAFGFDINYAKQRDPDSMFGFFKD ENQFDPLTNRAYRVQTGVVTGHATAYYQPEWFPNTLLRVSAGQYLTEDKGVTVDFSKQFDSGVIVGAFATKTNLSADEYG EGSFTKGFYISIPFDLMTVKSTHSRAFLSWMPLTRDGGQMLGRKYNLFDVTDARAPWYTKPSVDPIK
Sequences:
>Translated_787_residues MKKSSHSIHTLGRLSALSLALLPLVQVTADEFSYPTLLASQSDFGGVGLIQMPTGRMAPEGEFNFATSYNDDYQHFTASV QLFPWFETTVRYTQVQDLLYSSDPNFSGNTKYTDKGIDFKVRLLEETNWLPETSFGVRDFGGTGLFDGEFIAATKRVGPL DFTLGIGWGYIGNSGNLTSDKKDLNYNCDRDTSVGGKGGTVDYQRWFKGCAALFGGVEYQTPWDPLRLKLEYDGNDYQSD YPVVRGRDRNAMPQDSKFNYGLLYRFGDWGDLHLSYERGNTWTLGFSLQTNFNTLTQIKRDPAAAKYKPIPAAPLTHVQT ANIPLDSVSPSENIIATADTTLHIKEEIADTHLIVQPKEAMLKTTIDWNRVAQDLQTISGYSNAKIYLDSDSITVVGEQT KYRDRNEAHQRAATILANNSDLTQIKEYRLIETHYSQPITETRIDAEKFAQVASFGYLNAKVTDASQVVVPRLPQGELVT RTDADWLDKLGFDVAPTMVQSFGGSEGFYMFNIGVTGSANYKFTDNFEFGGSLYLNLYDNYDKFLYDVPPDGTDLKRVRT LIRQYVHDNPVRVNNLQLTWMDNLSDNISYQAYGGYLEMMYGGVGTEFLYRPLNSQWAFGFDINYAKQRDPDSMFGFFKD ENQFDPLTNRAYRVQTGVVTGHATAYYQPEWFPNTLLRVSAGQYLTEDKGVTVDFSKQFDSGVIVGAFATKTNLSADEYG EGSFTKGFYISIPFDLMTVKSTHSRAFLSWMPLTRDGGQMLGRKYNLFDVTDARAPWYTKPSVDPIK >Mature_787_residues MKKSSHSIHTLGRLSALSLALLPLVQVTADEFSYPTLLASQSDFGGVGLIQMPTGRMAPEGEFNFATSYNDDYQHFTASV QLFPWFETTVRYTQVQDLLYSSDPNFSGNTKYTDKGIDFKVRLLEETNWLPETSFGVRDFGGTGLFDGEFIAATKRVGPL DFTLGIGWGYIGNSGNLTSDKKDLNYNCDRDTSVGGKGGTVDYQRWFKGCAALFGGVEYQTPWDPLRLKLEYDGNDYQSD YPVVRGRDRNAMPQDSKFNYGLLYRFGDWGDLHLSYERGNTWTLGFSLQTNFNTLTQIKRDPAAAKYKPIPAAPLTHVQT ANIPLDSVSPSENIIATADTTLHIKEEIADTHLIVQPKEAMLKTTIDWNRVAQDLQTISGYSNAKIYLDSDSITVVGEQT KYRDRNEAHQRAATILANNSDLTQIKEYRLIETHYSQPITETRIDAEKFAQVASFGYLNAKVTDASQVVVPRLPQGELVT RTDADWLDKLGFDVAPTMVQSFGGSEGFYMFNIGVTGSANYKFTDNFEFGGSLYLNLYDNYDKFLYDVPPDGTDLKRVRT LIRQYVHDNPVRVNNLQLTWMDNLSDNISYQAYGGYLEMMYGGVGTEFLYRPLNSQWAFGFDINYAKQRDPDSMFGFFKD ENQFDPLTNRAYRVQTGVVTGHATAYYQPEWFPNTLLRVSAGQYLTEDKGVTVDFSKQFDSGVIVGAFATKTNLSADEYG EGSFTKGFYISIPFDLMTVKSTHSRAFLSWMPLTRDGGQMLGRKYNLFDVTDARAPWYTKPSVDPIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli ymcA [H]
Homologues:
Organism=Escherichia coli, GI1790461, Length=770, Percent_Identity=44.5454545454545, Blast_Score=587, Evalue=1e-169, Organism=Escherichia coli, GI1787219, Length=788, Percent_Identity=42.3857868020305, Blast_Score=568, Evalue=1e-163,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010344 [H]
Pfam domain/function: PF06082 DUF940 [H]
EC number: NA
Molecular weight: Translated: 88650; Mature: 88650
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKSSHSIHTLGRLSALSLALLPLVQVTADEFSYPTLLASQSDFGGVGLIQMPTGRMAPE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEECCCCCCCCC GEFNFATSYNDDYQHFTASVQLFPWFETTVRYTQVQDLLYSSDPNFSGNTKYTDKGIDFK CCEEEEECCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEE VRLLEETNWLPETSFGVRDFGGTGLFDGEFIAATKRVGPLDFTLGIGWGYIGNSGNLTSD EEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCEEEECCCCCCCCC KKDLNYNCDRDTSVGGKGGTVDYQRWFKGCAALFGGVEYQTPWDPLRLKLEYDGNDYQSD CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCC YPVVRGRDRNAMPQDSKFNYGLLYRFGDWGDLHLSYERGNTWTLGFSLQTNFNTLTQIKR CCEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCEEEEEEEEECCCHHHHHHHC DPAAAKYKPIPAAPLTHVQTANIPLDSVSPSENIIATADTTLHIKEEIADTHLIVQPKEA CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCEEEEHHHHCCCEEEECCHHH MLKTTIDWNRVAQDLQTISGYSNAKIYLDSDSITVVGEQTKYRDRNEAHQRAATILANNS HHEECCCHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHEEEEECCC DLTQIKEYRLIETHYSQPITETRIDAEKFAQVASFGYLNAKVTDASQVVVPRLPQGELVT CHHHHHHHEEEEHHCCCCCHHHHCCHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCEEE RTDADWLDKLGFDVAPTMVQSFGGSEGFYMFNIGVTGSANYKFTDNFEFGGSLYLNLYDN ECCHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCEEEECCCCCCCEEEEEEECC YDKFLYDVPPDGTDLKRVRTLIRQYVHDNPVRVNNLQLTWMDNLSDNISYQAYGGYLEMM CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCEEEEECCEEEEE YGGVGTEFLYRPLNSQWAFGFDINYAKQRDPDSMFGFFKDENQFDPLTNRAYRVQTGVVT CCCCCHHHHEECCCCCEEEEEECCCCCCCCCHHHCCEECCCCCCCCCCCCEEEEEEEEEE GHATAYYQPEWFPNTLLRVSAGQYLTEDKGVTVDFSKQFDSGVIVGAFATKTNLSADEYG CCEEEEECCCCCCCCEEEEECCCEEECCCCEEEEECCCCCCCEEEEEEEECCCCCCCCCC EGSFTKGFYISIPFDLMTVKSTHSRAFLSWMPLTRDGGQMLGRKYNLFDVTDARAPWYTK CCCCCCCEEEEECCEEEEEECCCCEEEEEECCCCCCCHHHHCCEECEEEECCCCCCCCCC PSVDPIK CCCCCCC >Mature Secondary Structure MKKSSHSIHTLGRLSALSLALLPLVQVTADEFSYPTLLASQSDFGGVGLIQMPTGRMAPE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEECCCCCCCCC GEFNFATSYNDDYQHFTASVQLFPWFETTVRYTQVQDLLYSSDPNFSGNTKYTDKGIDFK CCEEEEECCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEE VRLLEETNWLPETSFGVRDFGGTGLFDGEFIAATKRVGPLDFTLGIGWGYIGNSGNLTSD EEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCEEEECCCCCCCCC KKDLNYNCDRDTSVGGKGGTVDYQRWFKGCAALFGGVEYQTPWDPLRLKLEYDGNDYQSD CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCC YPVVRGRDRNAMPQDSKFNYGLLYRFGDWGDLHLSYERGNTWTLGFSLQTNFNTLTQIKR CCEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCEEEEEEEEECCCHHHHHHHC DPAAAKYKPIPAAPLTHVQTANIPLDSVSPSENIIATADTTLHIKEEIADTHLIVQPKEA CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCEEEEHHHHCCCEEEECCHHH MLKTTIDWNRVAQDLQTISGYSNAKIYLDSDSITVVGEQTKYRDRNEAHQRAATILANNS HHEECCCHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHEEEEECCC DLTQIKEYRLIETHYSQPITETRIDAEKFAQVASFGYLNAKVTDASQVVVPRLPQGELVT CHHHHHHHEEEEHHCCCCCHHHHCCHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCEEE RTDADWLDKLGFDVAPTMVQSFGGSEGFYMFNIGVTGSANYKFTDNFEFGGSLYLNLYDN ECCHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCEEEECCCCCCCEEEEEEECC YDKFLYDVPPDGTDLKRVRTLIRQYVHDNPVRVNNLQLTWMDNLSDNISYQAYGGYLEMM CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCEEEEECCEEEEE YGGVGTEFLYRPLNSQWAFGFDINYAKQRDPDSMFGFFKDENQFDPLTNRAYRVQTGVVT CCCCCHHHHEECCCCCEEEEEECCCCCCCCCHHHCCEECCCCCCCCCCCCEEEEEEEEEE GHATAYYQPEWFPNTLLRVSAGQYLTEDKGVTVDFSKQFDSGVIVGAFATKTNLSADEYG CCEEEEECCCCCCCCEEEEECCCEEECCCCEEEEECCCCCCCEEEEEEEECCCCCCCCCC EGSFTKGFYISIPFDLMTVKSTHSRAFLSWMPLTRDGGQMLGRKYNLFDVTDARAPWYTK CCCCCCCEEEEECCEEEEEECCCCEEEEEECCCCCCCHHHHCCEECEEEECCCCCCCCCC PSVDPIK CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8265357; 9278503 [H]