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The map label for this gene is ssaJ [H]

Identifier: 160875378

GI number: 160875378

Start: 2687473

End: 2688192

Strand: Direct

Name: ssaJ [H]

Synonym: Sbal195_2266

Alternate gene names: 160875378

Gene position: 2687473-2688192 (Clockwise)

Preceding gene: 160875377

Following gene: 160875379

Centisome position: 50.26

GC content: 42.92

Gene sequence:

>720_bases
ATGAAACATTTTAAATGGTCAATATTGTTGCTCGTCTTCGCATTGACTGGATGCAAAGTCGATCTCTATCGAGATCTTCC
ACAAGATGAAGCGAATCAAATGGTCGCCCTGTTGATGCTTAATCACATAGATGCCAGTGCTGAAGCGGATCAAAAATCAG
GTAATGTGTCCTTAAAAATAGATAAAGATCAATTTATCAATGCCGTTGAATTACTGAGGCAAAATGGCTTTCCTAAACCT
CATTATGCCAATATCGAGGATTTGTTCCCTTCGGGTCAGTTAGTGACTTCACCCGCCCAAGAGGAAGCGAAAATGGGTTA
TCTAAAAGAGCAACAACTTGAGCGTACCTTGTCGAGTATGGATGGGGTGATTAGCGCTAGGGTGTCTATTGCTGAACCTG
CACCCGACTCAGGGCGTCAGATTGCACTGACTAAGTCGGCCTCCGTATACATTAAATATTCACCTCAGGCTAACTTAACA
AATACGGAAAATCAGATTAAGAGCTTAGTGCAGAATGCCGTTCCAGGACTGAGTTACGACAATATCAGTGTCTTTTTGCA
AGCTGCGAGTTATCGCTATCAAGCAATTACCCAGCCGACTAGCAGTAGTTCATCTCAATTTTTAGCCCAGGTCGAAGCGT
ACAAGTTACCATTAGTGATCAGCTTATCTGGAATAATGCTACTCAGCATAGGCGGTATGTGGTGGATGAGACGTAAGTAA

Upstream 100 bases:

>100_bases
GCGGACAGCTCTTGATGGGTAAAGCCATAGTTGAGGTCGATCTGGCGGCAAAGACTGCGGGCGCCGTCTCCCAATCCATA
AACAAATTGGTGAATATGCA

Downstream 100 bases:

>100_bases
CCATAACAATTGTTGTTTCTGGAGGAACTATGGAGGACTTGACCCCTAATCAACCACTAATACGGGTCGAAGCTACTGGC
CAAAACAAGTTAAATCGAGT

Product: YscJ/HrcJ family type III secretion apparatus lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKHFKWSILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIDKDQFINAVELLRQNGFPKP
HYANIEDLFPSGQLVTSPAQEEAKMGYLKEQQLERTLSSMDGVISARVSIAEPAPDSGRQIALTKSASVYIKYSPQANLT
NTENQIKSLVQNAVPGLSYDNISVFLQAASYRYQAITQPTSSSSSQFLAQVEAYKLPLVISLSGIMLLSIGGMWWMRRK

Sequences:

>Translated_239_residues
MKHFKWSILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIDKDQFINAVELLRQNGFPKP
HYANIEDLFPSGQLVTSPAQEEAKMGYLKEQQLERTLSSMDGVISARVSIAEPAPDSGRQIALTKSASVYIKYSPQANLT
NTENQIKSLVQNAVPGLSYDNISVFLQAASYRYQAITQPTSSSSSQFLAQVEAYKLPLVISLSGIMLLSIGGMWWMRRK
>Mature_239_residues
MKHFKWSILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIDKDQFINAVELLRQNGFPKP
HYANIEDLFPSGQLVTSPAQEEAKMGYLKEQQLERTLSSMDGVISARVSIAEPAPDSGRQIALTKSASVYIKYSPQANLT
NTENQIKSLVQNAVPGLSYDNISVFLQAASYRYQAITQPTSSSSSQFLAQVEAYKLPLVISLSGIMLLSIGGMWWMRRK

Specific function: Unknown

COG id: COG4669

COG function: function code U; Type III secretory pathway, lipoprotein EscJ

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yscJ lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003282
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF [H]

EC number: NA

Molecular weight: Translated: 26518; Mature: 26518

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHFKWSILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKI
CCCHHHHHHHHHHHHHCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
DKDQFINAVELLRQNGFPKPHYANIEDLFPSGQLVTSPAQEEAKMGYLKEQQLERTLSSM
CHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCEEECCCHHHHHHCHHHHHHHHHHHHHH
DGVISARVSIAEPAPDSGRQIALTKSASVYIKYSPQANLTNTENQIKSLVQNAVPGLSYD
CCHHHEEEEECCCCCCCCCEEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC
NISVFLQAASYRYQAITQPTSSSSSQFLAQVEAYKLPLVISLSGIMLLSIGGMWWMRRK
CHHEEEEHHHHHEEEECCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHCCEEEEECC
>Mature Secondary Structure
MKHFKWSILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKI
CCCHHHHHHHHHHHHHCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
DKDQFINAVELLRQNGFPKPHYANIEDLFPSGQLVTSPAQEEAKMGYLKEQQLERTLSSM
CHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCEEECCCHHHHHHCHHHHHHHHHHHHHH
DGVISARVSIAEPAPDSGRQIALTKSASVYIKYSPQANLTNTENQIKSLVQNAVPGLSYD
CCHHHEEEEECCCCCCCCCEEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC
NISVFLQAASYRYQAITQPTSSSSSQFLAQVEAYKLPLVISLSGIMLLSIGGMWWMRRK
CHHEEEEHHHHHEEEECCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140973; 11677609 [H]