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The map label for this gene is yscC [H]

Identifier: 160875361

GI number: 160875361

Start: 2673584

End: 2675059

Strand: Direct

Name: yscC [H]

Synonym: Sbal195_2249

Alternate gene names: 160875361

Gene position: 2673584-2675059 (Clockwise)

Preceding gene: 160875360

Following gene: 160875362

Centisome position: 50.0

GC content: 45.19

Gene sequence:

>1476_bases
ATGAAAAAACTACTCAGTTTACTATTACTGTGTCAGATGGGCCTAGCTCAGGCTGCACCACTGACAAACATTAAATGGCA
AGGTGAGCCCTTTGTCATGATCAGTCGAGGTACAGCGCTAACCTCAGTCATCCAGGACTTTGCCAGTAATTATGGCGTAC
CTGTCATTGTCAGTAATAAGGTCAACGACAACTATATTGGCCAAATCCAAGAACAAGATCCTAAATCCGTTATTCAAGAT
CTGACCCGTCGCTATGGCTTAGTTTGGTACTACAACAACGAAGTCTTATATGTTTACAAAGCCAGTGAAATTAATAGTGA
AGTGCTACCGTTAACTAGCTTATCCGCGACTAAGGTCGACCATTACCTGCGCAGTGCAGGAGTGTTAGATAAGGGGGTCT
GTAACATTAAATCTATGGCAGGGATCAGTGGCTTACAAGTCACAGGTGTACCCGAATGCATTAACAGTGTCACCAAACTT
ACGGCACAACTTGATGCCAATGCTAAACAAACCACAGAAAACCAAGAAACAGTTAAAGTCTATCCACTGAAATACGCATC
TGCCACAGACTCTATTTATGAATATCGTAGCCAACCTGTGAGTATTCCAGGATTAGTCACGGTGCTAAAAGAAATGGATC
AAGGTACACAAGTCGCCAATGCAGTGGCGGGTTCTGTGAGTAATATTAGCGGCCCAGTCTTTGCCGCTGATCCTCGTCAA
AACGCCATCATAGTCCGTGGAAGTGCCCGTGATATGGCCACTTATGGCTCTTTGATAAGACAACTCGATACTAAGCCCTC
CATGATTGAAGTGTCTGTATCGATATTCGATGTGGACGCCTCTGACTTTAAACAGTTGGGCATAGATTGGTCGGCGTCAG
CCAAATTAGGGGGCGGTTCAGTCAGTTTCAACAGTGGTGATAGCAGTGACAATTTTTCCACTGTCATAGGCAATACTGGC
AACTTCATGATGCGCCTCAATGCACTAGAGAAGAACTCTAAGGCCAAAGTGCTCTCACGTCCCTCTGTGGTTACGTTAAA
CAATGTGCAAGCAGTACTCGATAAAAACGTGACATTTTACACTAAGTTGGAAGGGGATAAAGTCGCTAAATTAGAGTCAG
TGACCACTGGTTCTCTATTACGAGTCACACCAAGATTGATTGATGAAGTAGGTCATCAGGCTGTGATGTTGGATCTCAAT
ATTCAGGATGGTCAACAGAGCCAAGCAGTGAGCCGTAGTGAACCATTACCACAAGTGCAAAACTCCGAGATCTCGACTCA
GGCGACGCTGAAATCGGGGGAGAGTCTGTTACTCGGCGGCTTCGTACAAGATAGAGATGAAACGACCCAGAACAAGATCC
CGTTACTAGGCGATCTACCATTACTGGGCGGTTTGTTTAGAAGCACAGATCACCACACTCAAAGCGTGATGCGTCTGTTC
CTGATCAAAGCGGAACCCGTTAACCAAGGAGATTAA

Upstream 100 bases:

>100_bases
CTCAAGGGATTGTCATGCAACTTGCAATAGCGAGGTTTCTCGAAAAGAGCCTGCTTAAACCTGTTGATAGCAATCGAGCC
TCGCTCATCGGGAGGACAGT

Downstream 100 bases:

>100_bases
TATGTCTTCAGGATACAAGCTCTTATGGTTAAACGGTCCATTGCAAGGACGAGAGCTATCTTTGCCTCTTGGTAACTTAA
GCATCGGACCCGATGGTGAT

Product: YscC/HrcC family type III secretion outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MKKLLSLLLLCQMGLAQAAPLTNIKWQGEPFVMISRGTALTSVIQDFASNYGVPVIVSNKVNDNYIGQIQEQDPKSVIQD
LTRRYGLVWYYNNEVLYVYKASEINSEVLPLTSLSATKVDHYLRSAGVLDKGVCNIKSMAGISGLQVTGVPECINSVTKL
TAQLDANAKQTTENQETVKVYPLKYASATDSIYEYRSQPVSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQ
NAIIVRGSARDMATYGSLIRQLDTKPSMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSGDSSDNFSTVIGNTG
NFMMRLNALEKNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKLEGDKVAKLESVTTGSLLRVTPRLIDEVGHQAVMLDLN
IQDGQQSQAVSRSEPLPQVQNSEISTQATLKSGESLLLGGFVQDRDETTQNKIPLLGDLPLLGGLFRSTDHHTQSVMRLF
LIKAEPVNQGD

Sequences:

>Translated_491_residues
MKKLLSLLLLCQMGLAQAAPLTNIKWQGEPFVMISRGTALTSVIQDFASNYGVPVIVSNKVNDNYIGQIQEQDPKSVIQD
LTRRYGLVWYYNNEVLYVYKASEINSEVLPLTSLSATKVDHYLRSAGVLDKGVCNIKSMAGISGLQVTGVPECINSVTKL
TAQLDANAKQTTENQETVKVYPLKYASATDSIYEYRSQPVSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQ
NAIIVRGSARDMATYGSLIRQLDTKPSMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSGDSSDNFSTVIGNTG
NFMMRLNALEKNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKLEGDKVAKLESVTTGSLLRVTPRLIDEVGHQAVMLDLN
IQDGQQSQAVSRSEPLPQVQNSEISTQATLKSGESLLLGGFVQDRDETTQNKIPLLGDLPLLGGLFRSTDHHTQSVMRLF
LIKAEPVNQGD
>Mature_491_residues
MKKLLSLLLLCQMGLAQAAPLTNIKWQGEPFVMISRGTALTSVIQDFASNYGVPVIVSNKVNDNYIGQIQEQDPKSVIQD
LTRRYGLVWYYNNEVLYVYKASEINSEVLPLTSLSATKVDHYLRSAGVLDKGVCNIKSMAGISGLQVTGVPECINSVTKL
TAQLDANAKQTTENQETVKVYPLKYASATDSIYEYRSQPVSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQ
NAIIVRGSARDMATYGSLIRQLDTKPSMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSGDSSDNFSTVIGNTG
NFMMRLNALEKNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKLEGDKVAKLESVTTGSLLRVTPRLIDEVGHQAVMLDLN
IQDGQQSQAVSRSEPLPQVQNSEISTQATLKSGESLLLGGFVQDRDETTQNKIPLLGDLPLLGGLFRSTDHHTQSVMRLF
LIKAEPVNQGD

Specific function: Very likely required for the export process of the yop proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=376, Percent_Identity=26.063829787234, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1789793, Length=244, Percent_Identity=24.5901639344262, Blast_Score=76, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR004845
- InterPro:   IPR003522 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 53190; Mature: 53190

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS00875 T2SP_D

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLSLLLLCQMGLAQAAPLTNIKWQGEPFVMISRGTALTSVIQDFASNYGVPVIVSNK
CHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEECCHHHHHHHHHHHHCCCCEEEEECC
VNDNYIGQIQEQDPKSVIQDLTRRYGLVWYYNNEVLYVYKASEINSEVLPLTSLSATKVD
CCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCEEEEEEECCCCCCCCCCCCCCCHHHHH
HYLRSAGVLDKGVCNIKSMAGISGLQVTGVPECINSVTKLTAQLDANAKQTTENQETVKV
HHHHHCCCCCCCCCCHHHHCCCCCEEECCHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEE
YPLKYASATDSIYEYRSQPVSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQ
EEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEECCCC
NAIIVRGSARDMATYGSLIRQLDTKPSMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGS
CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCHHHHHHHCCCCCCCCCCCCCE
VSFNSGDSSDNFSTVIGNTGNFMMRLNALEKNSKAKVLSRPSVVTLNNVQAVLDKNVTFY
EEECCCCCCCCCEEEECCCCCEEEEEECCCCCCCCEEECCCCEEEECCHHHHHCCCCEEE
TKLEGDKVAKLESVTTGSLLRVTPRLIDEVGHQAVMLDLNIQDGQQSQAVSRSEPLPQVQ
EEECCCCEEHHHCCCCCCCEEECHHHHHHCCCEEEEEEEECCCCCHHHHHHCCCCCCCCC
NSEISTQATLKSGESLLLGGFVQDRDETTQNKIPLLGDLPLLGGLFRSTDHHTQSVMRLF
CCCCCHHHHHHCCCEEEEECEECCCCCCCCCCCCEEECCHHHHHHHHCCCHHHHHHHHHH
LIKAEPVNQGD
EEECCCCCCCC
>Mature Secondary Structure
MKKLLSLLLLCQMGLAQAAPLTNIKWQGEPFVMISRGTALTSVIQDFASNYGVPVIVSNK
CHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEECCHHHHHHHHHHHHCCCCEEEEECC
VNDNYIGQIQEQDPKSVIQDLTRRYGLVWYYNNEVLYVYKASEINSEVLPLTSLSATKVD
CCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCEEEEEEECCCCCCCCCCCCCCCHHHHH
HYLRSAGVLDKGVCNIKSMAGISGLQVTGVPECINSVTKLTAQLDANAKQTTENQETVKV
HHHHHCCCCCCCCCCHHHHCCCCCEEECCHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEE
YPLKYASATDSIYEYRSQPVSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQ
EEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEECCCC
NAIIVRGSARDMATYGSLIRQLDTKPSMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGS
CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCHHHHHHHCCCCCCCCCCCCCE
VSFNSGDSSDNFSTVIGNTGNFMMRLNALEKNSKAKVLSRPSVVTLNNVQAVLDKNVTFY
EEECCCCCCCCCEEEECCCCCEEEEEECCCCCCCCEEECCCCEEEECCHHHHHCCCCEEE
TKLEGDKVAKLESVTTGSLLRVTPRLIDEVGHQAVMLDLNIQDGQQSQAVSRSEPLPQVQ
EEECCCCEEHHHCCCCCCCEEECHHHHHHCCCEEEEEEEECCCCCHHHHHHCCCCCCCCC
NSEISTQATLKSGESLLLGGFVQDRDETTQNKIPLLGDLPLLGGLFRSTDHHTQSVMRLF
CCCCCHHHHHHCCCEEEEECEECCCCCCCCCCCCEEECCHHHHHHHHCCCHHHHHHHHHH
LIKAEPVNQGD
EEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1860816 [H]