Click here to switch to the map view.

The map label for this gene is xerD [C]

Identifier: 160875353

GI number: 160875353

Start: 2663066

End: 2663956

Strand: Reverse

Name: xerD [C]

Synonym: Sbal195_2241

Alternate gene names: 160875353

Gene position: 2663956-2663066 (Counterclockwise)

Preceding gene: 160875359

Following gene: 160875352

Centisome position: 49.82

GC content: 49.49

Gene sequence:

>891_bases
ATGGACATTCACGAACAACAACGCTTTGATTTACTTTATGAACAACATCTTACCAACTTAACCTTGCAAGGCAAGCGGCC
TGCAACCATTGATGCCTATAGCCGAGCTATACGCCGTATTGCGGCATATTTTGACTGCTGCCCCGACACCCTGACCACCG
ATGATTTAAAGCGCTATTTTGCCGACTTAATTGCCTCACATTCATGGAGCACCGTCAAACTCGACCGTAACGGCTTGCAG
TTTTTCTACTTTCACGTCCTCAATAAATCTTGGCAGTGGCTTAATATTGTTAAGCCTCCACAGGTGAAGCACCTGCCCGA
TATCCTCACGCCCTGCGAGGTCGCGATAGTTATCAGCCTCACGCGCCAGCTGCGTTATCAGGTCTGTTTCTTAACCCTGT
ACAGCATGGGATTGCGCCTTGGTGAAGCGATTTCATTACAGGTCGGGGATATTGATGCGGGGCTGATGCAGGTGCATATC
CGTGATGCTAAAGGTGGCAAGGATAGACTGGTGCCTTTACCTCAACGCACCTTGTTAGCCTTACGCTATTATTGGCGCAC
CCACCGTCATCCTCACTGGCTATTTCCGGGTAAAGATAATCAACCTGATTCACTCATGGACAGAGGCGGGCTCCAAAAAG
CCATGAAGCAAGTCATTTTAGAGTGCAACATTCATAAAGCCATCAGTCCGCACAGTCTACGCCACAGTTATGCCACCCAT
TTACTGGAGCAAGGACTCGATTTGCGCTCAGTGCAAACACTGCTCGGCCACCATAGCCTGAATACCACCGCCCGTTACAC
GCGGCTCACTGATATCACCCGTAAAAATACCTGTGAGGCGATTAACCAACTGACCAACGGCTTAGCTTTGAGGTGGGAGT
GTGGGTTATGA

Upstream 100 bases:

>100_bases
CCGCTTTGCGGCAGGAACAAGATAAAACCATCCTTTTGCCCCTCATCCTAAATACTTGCTAGACGCGACCTGCTTCGGTC
GCAAACCTAGGAGTATCATC

Downstream 100 bases:

>100_bases
GCCAGTTTATCGATATTTTACGCCAACATCTGGCGGATTTTCGGCGGCGTTATGCCCATCAAATCACCCCAGAAATACAT
GCTGCTATCCATGCCATGCT

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MDIHEQQRFDLLYEQHLTNLTLQGKRPATIDAYSRAIRRIAAYFDCCPDTLTTDDLKRYFADLIASHSWSTVKLDRNGLQ
FFYFHVLNKSWQWLNIVKPPQVKHLPDILTPCEVAIVISLTRQLRYQVCFLTLYSMGLRLGEAISLQVGDIDAGLMQVHI
RDAKGGKDRLVPLPQRTLLALRYYWRTHRHPHWLFPGKDNQPDSLMDRGGLQKAMKQVILECNIHKAISPHSLRHSYATH
LLEQGLDLRSVQTLLGHHSLNTTARYTRLTDITRKNTCEAINQLTNGLALRWECGL

Sequences:

>Translated_296_residues
MDIHEQQRFDLLYEQHLTNLTLQGKRPATIDAYSRAIRRIAAYFDCCPDTLTTDDLKRYFADLIASHSWSTVKLDRNGLQ
FFYFHVLNKSWQWLNIVKPPQVKHLPDILTPCEVAIVISLTRQLRYQVCFLTLYSMGLRLGEAISLQVGDIDAGLMQVHI
RDAKGGKDRLVPLPQRTLLALRYYWRTHRHPHWLFPGKDNQPDSLMDRGGLQKAMKQVILECNIHKAISPHSLRHSYATH
LLEQGLDLRSVQTLLGHHSLNTTARYTRLTDITRKNTCEAINQLTNGLALRWECGL
>Mature_296_residues
MDIHEQQRFDLLYEQHLTNLTLQGKRPATIDAYSRAIRRIAAYFDCCPDTLTTDDLKRYFADLIASHSWSTVKLDRNGLQ
FFYFHVLNKSWQWLNIVKPPQVKHLPDILTPCEVAIVISLTRQLRYQVCFLTLYSMGLRLGEAISLQVGDIDAGLMQVHI
RDAKGGKDRLVPLPQRTLLALRYYWRTHRHPHWLFPGKDNQPDSLMDRGGLQKAMKQVILECNIHKAISPHSLRHSYATH
LLEQGLDLRSVQTLLGHHSLNTTARYTRLTDITRKNTCEAINQLTNGLALRWECGL

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=261, Percent_Identity=31.4176245210728, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1790244, Length=183, Percent_Identity=30.6010928961749, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34204; Mature: 34204

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIHEQQRFDLLYEQHLTNLTLQGKRPATIDAYSRAIRRIAAYFDCCPDTLTTDDLKRYF
CCCCHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
ADLIASHSWSTVKLDRNGLQFFYFHVLNKSWQWLNIVKPPQVKHLPDILTPCEVAIVISL
HHHHHCCCCCEEEECCCCCHHHHHHHHCCCCCEEECCCCCCHHHCHHHCCHHHHHHHHHH
TRQLRYQVCFLTLYSMGLRLGEAISLQVGDIDAGLMQVHIRDAKGGKDRLVPLPQRTLLA
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
LRYYWRTHRHPHWLFPGKDNQPDSLMDRGGLQKAMKQVILECNIHKAISPHSLRHSYATH
HHHHHHHCCCCCEECCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LLEQGLDLRSVQTLLGHHSLNTTARYTRLTDITRKNTCEAINQLTNGLALRWECGL
HHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
>Mature Secondary Structure
MDIHEQQRFDLLYEQHLTNLTLQGKRPATIDAYSRAIRRIAAYFDCCPDTLTTDDLKRYF
CCCCHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
ADLIASHSWSTVKLDRNGLQFFYFHVLNKSWQWLNIVKPPQVKHLPDILTPCEVAIVISL
HHHHHCCCCCEEEECCCCCHHHHHHHHCCCCCEEECCCCCCHHHCHHHCCHHHHHHHHHH
TRQLRYQVCFLTLYSMGLRLGEAISLQVGDIDAGLMQVHIRDAKGGKDRLVPLPQRTLLA
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
LRYYWRTHRHPHWLFPGKDNQPDSLMDRGGLQKAMKQVILECNIHKAISPHSLRHSYATH
HHHHHHHCCCCCEECCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LLEQGLDLRSVQTLLGHHSLNTTARYTRLTDITRKNTCEAINQLTNGLALRWECGL
HHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]