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The map label for this gene is arrD [H]

Identifier: 160875242

GI number: 160875242

Start: 2536747

End: 2537313

Strand: Direct

Name: arrD [H]

Synonym: Sbal195_2129

Alternate gene names: 160875242

Gene position: 2536747-2537313 (Clockwise)

Preceding gene: 160875241

Following gene: 160875243

Centisome position: 47.44

GC content: 54.32

Gene sequence:

>567_bases
ATGAACAGTAAACTCAAGGCGATTTTACTGGCCGCTGGCTTAAGTTCGGCGGCTATCACTGGCGCACAGCTTACCGATAA
ATGGGAAGGCAATAGCCTGAGCGTCTATGTCGATGCGGTGGGTGTACTGACCGCCTGCCGTGGCCATACGAGCAAAGACT
TAAAGCTTGATCAAATCTTCACCGAACAGCAATGCATGGAGATTTTTGCCAAGGATATCGCTCGCGCTGATAAGCAGTTG
CTGCAACTCACGGCCCCTGTAGCACTTACTGATGGCGAGCATGCGGCCTATCTGTCGTTTATGCATTGGGCGGGCTATGG
CAATTTTGCCAGCTCAACCCTGCGTAAAAAGCTGCTTGTAGGGGATCGTGTGGGCGCCTGCAAGGAGCTAACGCAGGCCT
GTTCCACCAATCCTCAAACGGGTGAGCGCATCTGCAATGGTTGGACCTATGGCACCCGCCTAGGTGCCAAGGTGCGCCTA
AATGGGCTGATTAAACGCCGCGCCGAAGAGCAGACCATTTGCTTAAGCGAACTGGGCCTCTCGCAATCAAAGGGGGGCGC
GCAATGA

Upstream 100 bases:

>100_bases
ACCCGTCAAAGCTACTTTGAACAAGGCTGGCATGCCGTCACTCACCTCCATATTTTAAAAGCCCGCGAGCAACGCAAGGC
ACAAGCTATGGCGGTGCCTA

Downstream 100 bases:

>100_bases
ATCCCTCACAAATCATTAGCACTGTGCAGTGGCTATTTTTGTCACTGGCATTAGTCACCATTGGGCTGATGTACCACCAA
CAGCAGAGCACTAAGAGCCA

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Endolysin; Lysis protein; Muramidase [H]

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MNSKLKAILLAAGLSSAAITGAQLTDKWEGNSLSVYVDAVGVLTACRGHTSKDLKLDQIFTEQQCMEIFAKDIARADKQL
LQLTAPVALTDGEHAAYLSFMHWAGYGNFASSTLRKKLLVGDRVGACKELTQACSTNPQTGERICNGWTYGTRLGAKVRL
NGLIKRRAEEQTICLSELGLSQSKGGAQ

Sequences:

>Translated_188_residues
MNSKLKAILLAAGLSSAAITGAQLTDKWEGNSLSVYVDAVGVLTACRGHTSKDLKLDQIFTEQQCMEIFAKDIARADKQL
LQLTAPVALTDGEHAAYLSFMHWAGYGNFASSTLRKKLLVGDRVGACKELTQACSTNPQTGERICNGWTYGTRLGAKVRL
NGLIKRRAEEQTICLSELGLSQSKGGAQ
>Mature_188_residues
MNSKLKAILLAAGLSSAAITGAQLTDKWEGNSLSVYVDAVGVLTACRGHTSKDLKLDQIFTEQQCMEIFAKDIARADKQL
LQLTAPVALTDGEHAAYLSFMHWAGYGNFASSTLRKKLLVGDRVGACKELTQACSTNPQTGERICNGWTYGTRLGAKVRL
NGLIKRRAEEQTICLSELGLSQSKGGAQ

Specific function: Essential for lysis of bacterial cell wall, by showing cell wall hydrolyzing activity [H]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 24 family [H]

Homologues:

Organism=Escherichia coli, GI1786768, Length=160, Percent_Identity=35.625, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002196 [H]

Pfam domain/function: PF00959 Phage_lysozyme [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 20237; Mature: 20237

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSKLKAILLAAGLSSAAITGAQLTDKWEGNSLSVYVDAVGVLTACRGHTSKDLKLDQIF
CCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCHHHHH
TEQQCMEIFAKDIARADKQLLQLTAPVALTDGEHAAYLSFMHWAGYGNFASSTLRKKLLV
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
GDRVGACKELTQACSTNPQTGERICNGWTYGTRLGAKVRLNGLIKRRAEEQTICLSELGL
CCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
SQSKGGAQ
CCCCCCCC
>Mature Secondary Structure
MNSKLKAILLAAGLSSAAITGAQLTDKWEGNSLSVYVDAVGVLTACRGHTSKDLKLDQIF
CCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCHHHHH
TEQQCMEIFAKDIARADKQLLQLTAPVALTDGEHAAYLSFMHWAGYGNFASSTLRKKLLV
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
GDRVGACKELTQACSTNPQTGERICNGWTYGTRLGAKVRLNGLIKRRAEEQTICLSELGL
CCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
SQSKGGAQ
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]