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The map label for this gene is yciR [C]

Identifier: 160875202

GI number: 160875202

Start: 2487660

End: 2489909

Strand: Direct

Name: yciR [C]

Synonym: Sbal195_2089

Alternate gene names: 160875202

Gene position: 2487660-2489909 (Clockwise)

Preceding gene: 160875201

Following gene: 160875205

Centisome position: 46.52

GC content: 45.02

Gene sequence:

>2250_bases
ATGGCGTACGGCGTTAATCTTCCAGATCTGCTCGACCATACTGATGTTAAACTCGCCCACAATGTCAGCATAGCTTGCTA
TAGCAGTATTCTCTCTATGCTGCTTAATGGCGCACCGCTACATGAAATCTTGCACGCCTTAGTGCTAAAAATCGAAGCGC
AAAAGATAGGCACTCGAGGGTCTGTATTACTGCTCAGCGGTGACGGCAAACGTTTGTTGTTAGGCGCTGCGCCCCATTTA
CCCGACAGTTACAACCAAGCGATTAATGGGGTCGAGATTGGCCCAAATGTCGGCTCCTGCGGCACCGCGGCTTATTTTGC
AAAGCGCATCATTGTTGAAGACATAGCTACACATCCTTATTGGGAAAATTATAAAGAACTGCCATTACGCGCCGGTCTTA
AATCTTGTTGGTCTGAACCTATCAAAGATAATCAAGGCAAAGTGCTCGGTACATTTGCCATGTACTACGATACGATAAAG
TCCCCAACTGAGCTTGATTTAGAGCTGATTTCAGAGGCGGCACGATTAGCCAGTTTGGCCATTGAGCGCAGTCGGGCAAT
GGAGTTTCAGCATTTAGCGGTGAAAATTTTTGATCGCTTACCTTTGGCGTTGGTTATCTCCAATTCTGATGATTCCGTCC
TCTATGCTAACCCTGCTTTTAAGCACATCGTTCTTCCACAAGATATTGATATAGCAAATTTTAATCCTAAGGTGTTTTTG
TCTGCGTCTCAACCCAATGAGTTAGTCGGCCTATTTGAGCATTTAGCGCAGGATAAAATGTGGCAGGGGGAATTGGTTGG
CTTAAGGGGCAATGGTGAGGAGTTTTACCTAGACCTTATCGTCAGTACATTTCGAGAGCCTAATGGATTACAGCCGTGTT
TTGCGTGGTTATTTTCCGATATTAGCGAACGTAAAAAAGCGGCAAAGCTGATTAAGTATCAGGCCAATAATGACTCGCTA
ACTGGGCTTGCTAACCGTAATGCCTTGTTTAAACAGATCCAATCCTTAATTACCTCCGACAGCCTGACGCCCGGCTTTAG
TTTTATGCTGATGGATTTAGATAACTTTAAGCAAGTTAACGACACCCATGGCCACGACAAAGGTGATGCATTATTAGTGC
AAGTGGTGCGGCAGATTTGTGAATGTCTCAATGACACTATGATGTTTGCACGCCTCGGCGGTGATGAGTTTGCCTTGCTA
TTACCTGGGATAGTCAATCAGAAAGAGTTGGCGCAACTTGCTGAAACAATTAATAAGCATGTGGCAAAACGTTATGTACT
TGCCGATGGCAAAGGCGTATATAGCTCGGTAAGTATTGGTATTGCGCGTTTTCCAGAAGATGCCCTCGATCTCGAGCAGC
TGTTAAATTGCGCCGATCAGGCCATGTATATTTCAAAGGCTAACGGTCGTAATCGATATCATTTTTTTACTGAGCAAATG
CAGCTCAATGCCGAGCGCATTGCCAGCCTTCATAATCAACTCAAGCAGGCACTCGATCAACAGACCTTCGAGCTTTATTA
CCAGCCCATAGTGAATGCGACCACAGGTTTGATTGTTCGCGCCGAGGTTTTACTTCGTTGGCAGCTTGAAGGGCAATTCA
TTCCCCCCGATGAGTTTATTCCTATCGCGGAGAACAGCGGCTTAATTGTTGATATTGGTCGAGATGTGCGCCTTGGCGCT
ATGCAAACCATCTTAGAGATGCAGGCTCATAATTGGCCGATTAACTTATCGGTAAATGTGTCGACCTTTGAGTTTTGGTC
CCATGAACTGCAAGATGCCTTTGTGGATTCCTTCGCTGAGATTACCGAGCAACTCGAAGTAACAGATTTCCCCTATGACA
GGTTAACCCTTGAGATCACTGAGTCTTTGCTGATGAAGCAACATACGCATCTTATTGATGTGCTTAATGGTTTGCGGCTT
AAGGGGATTAACATTTCATTGGACGACTTTGGTACGGGTTACTCATCTCTATCTTATTTAGCTAATTTTCCTATCGATCA
AATTAAGATCGACAAGAGTTTTATCGACCGATTAGATGAAGGCAAGCGCCACGAAGCGTTGGTGGAGGCCATAGTGCGGT
TAAGCCATGCGTTAGATTTAACCGTGACGGCAGAAGGGGTGGAAACTGAGTCACAACTCAAGTTTGTGATGTCGAATCAT
ATTCAAGAAATTCAAGGCTATCTTTTCTATAAACCTATGCCTAAAGCCGCCTTCTTTGCGCTGCTGGCAAAGCAAGCTGA
GCTGCATTAG

Upstream 100 bases:

>100_bases
TTTACTTAGTTAACATTAGTGCCTAGAATTTCCTATAAGTTATAAATATTTTAACATTGTGAATGTGTATTTATATTGCA
ACTTTGTTTGTAAGGGAATT

Downstream 100 bases:

>100_bases
GGTCTTGACATTGGACTTAGATGTGAGGGCGGCTTAATCAGCGACAGCCTGATTTAGACATCGGATTTAGATGTAAGTCA
TAATCCAAGGTTTAGATATA

Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 749; Mature: 748

Protein sequence:

>749_residues
MAYGVNLPDLLDHTDVKLAHNVSIACYSSILSMLLNGAPLHEILHALVLKIEAQKIGTRGSVLLLSGDGKRLLLGAAPHL
PDSYNQAINGVEIGPNVGSCGTAAYFAKRIIVEDIATHPYWENYKELPLRAGLKSCWSEPIKDNQGKVLGTFAMYYDTIK
SPTELDLELISEAARLASLAIERSRAMEFQHLAVKIFDRLPLALVISNSDDSVLYANPAFKHIVLPQDIDIANFNPKVFL
SASQPNELVGLFEHLAQDKMWQGELVGLRGNGEEFYLDLIVSTFREPNGLQPCFAWLFSDISERKKAAKLIKYQANNDSL
TGLANRNALFKQIQSLITSDSLTPGFSFMLMDLDNFKQVNDTHGHDKGDALLVQVVRQICECLNDTMMFARLGGDEFALL
LPGIVNQKELAQLAETINKHVAKRYVLADGKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTEQM
QLNAERIASLHNQLKQALDQQTFELYYQPIVNATTGLIVRAEVLLRWQLEGQFIPPDEFIPIAENSGLIVDIGRDVRLGA
MQTILEMQAHNWPINLSVNVSTFEFWSHELQDAFVDSFAEITEQLEVTDFPYDRLTLEITESLLMKQHTHLIDVLNGLRL
KGINISLDDFGTGYSSLSYLANFPIDQIKIDKSFIDRLDEGKRHEALVEAIVRLSHALDLTVTAEGVETESQLKFVMSNH
IQEIQGYLFYKPMPKAAFFALLAKQAELH

Sequences:

>Translated_749_residues
MAYGVNLPDLLDHTDVKLAHNVSIACYSSILSMLLNGAPLHEILHALVLKIEAQKIGTRGSVLLLSGDGKRLLLGAAPHL
PDSYNQAINGVEIGPNVGSCGTAAYFAKRIIVEDIATHPYWENYKELPLRAGLKSCWSEPIKDNQGKVLGTFAMYYDTIK
SPTELDLELISEAARLASLAIERSRAMEFQHLAVKIFDRLPLALVISNSDDSVLYANPAFKHIVLPQDIDIANFNPKVFL
SASQPNELVGLFEHLAQDKMWQGELVGLRGNGEEFYLDLIVSTFREPNGLQPCFAWLFSDISERKKAAKLIKYQANNDSL
TGLANRNALFKQIQSLITSDSLTPGFSFMLMDLDNFKQVNDTHGHDKGDALLVQVVRQICECLNDTMMFARLGGDEFALL
LPGIVNQKELAQLAETINKHVAKRYVLADGKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTEQM
QLNAERIASLHNQLKQALDQQTFELYYQPIVNATTGLIVRAEVLLRWQLEGQFIPPDEFIPIAENSGLIVDIGRDVRLGA
MQTILEMQAHNWPINLSVNVSTFEFWSHELQDAFVDSFAEITEQLEVTDFPYDRLTLEITESLLMKQHTHLIDVLNGLRL
KGINISLDDFGTGYSSLSYLANFPIDQIKIDKSFIDRLDEGKRHEALVEAIVRLSHALDLTVTAEGVETESQLKFVMSNH
IQEIQGYLFYKPMPKAAFFALLAKQAELH
>Mature_748_residues
AYGVNLPDLLDHTDVKLAHNVSIACYSSILSMLLNGAPLHEILHALVLKIEAQKIGTRGSVLLLSGDGKRLLLGAAPHLP
DSYNQAINGVEIGPNVGSCGTAAYFAKRIIVEDIATHPYWENYKELPLRAGLKSCWSEPIKDNQGKVLGTFAMYYDTIKS
PTELDLELISEAARLASLAIERSRAMEFQHLAVKIFDRLPLALVISNSDDSVLYANPAFKHIVLPQDIDIANFNPKVFLS
ASQPNELVGLFEHLAQDKMWQGELVGLRGNGEEFYLDLIVSTFREPNGLQPCFAWLFSDISERKKAAKLIKYQANNDSLT
GLANRNALFKQIQSLITSDSLTPGFSFMLMDLDNFKQVNDTHGHDKGDALLVQVVRQICECLNDTMMFARLGGDEFALLL
PGIVNQKELAQLAETINKHVAKRYVLADGKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTEQMQ
LNAERIASLHNQLKQALDQQTFELYYQPIVNATTGLIVRAEVLLRWQLEGQFIPPDEFIPIAENSGLIVDIGRDVRLGAM
QTILEMQAHNWPINLSVNVSTFEFWSHELQDAFVDSFAEITEQLEVTDFPYDRLTLEITESLLMKQHTHLIDVLNGLRLK
GINISLDDFGTGYSSLSYLANFPIDQIKIDKSFIDRLDEGKRHEALVEAIVRLSHALDLTVTAEGVETESQLKFVMSNHI
QEIQGYLFYKPMPKAAFFALLAKQAELH

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=442, Percent_Identity=38.0090497737557, Blast_Score=263, Evalue=4e-71,
Organism=Escherichia coli, GI87081921, Length=437, Percent_Identity=35.0114416475973, Blast_Score=221, Evalue=1e-58,
Organism=Escherichia coli, GI226510982, Length=435, Percent_Identity=27.816091954023, Blast_Score=158, Evalue=1e-39,
Organism=Escherichia coli, GI87081845, Length=243, Percent_Identity=36.6255144032922, Blast_Score=145, Evalue=8e-36,
Organism=Escherichia coli, GI1790496, Length=251, Percent_Identity=33.4661354581673, Blast_Score=136, Evalue=6e-33,
Organism=Escherichia coli, GI1786507, Length=255, Percent_Identity=35.2941176470588, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI87081743, Length=277, Percent_Identity=33.5740072202166, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI87081980, Length=260, Percent_Identity=33.4615384615385, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI1788502, Length=265, Percent_Identity=29.4339622641509, Blast_Score=113, Evalue=6e-26,
Organism=Escherichia coli, GI1788381, Length=361, Percent_Identity=28.808864265928, Blast_Score=106, Evalue=6e-24,
Organism=Escherichia coli, GI1787055, Length=270, Percent_Identity=30, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI87081881, Length=181, Percent_Identity=35.9116022099448, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1788849, Length=355, Percent_Identity=29.5774647887324, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=36.3636363636364, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI87082096, Length=437, Percent_Identity=25.1716247139588, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=35.672514619883, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI1787802, Length=183, Percent_Identity=33.879781420765, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081977, Length=165, Percent_Identity=35.7575757575758, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=33.9393939393939, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1788956, Length=161, Percent_Identity=34.1614906832298, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787816, Length=176, Percent_Identity=32.9545454545455, Blast_Score=83, Evalue=8e-17,
Organism=Escherichia coli, GI1786584, Length=181, Percent_Identity=25.9668508287293, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787410, Length=119, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788085, Length=164, Percent_Identity=29.8780487804878, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI87081974, Length=163, Percent_Identity=30.0613496932515, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787056, Length=127, Percent_Identity=34.6456692913386, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 83841; Mature: 83710

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS50883 EAL ; PS50887 GGDEF ; PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYGVNLPDLLDHTDVKLAHNVSIACYSSILSMLLNGAPLHEILHALVLKIEAQKIGTRG
CCCCCCCHHHHCCCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
SVLLLSGDGKRLLLGAAPHLPDSYNQAINGVEIGPNVGSCGTAAYFAKRIIVEDIATHPY
CEEEEECCCCEEEEECCCCCCCHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
WENYKELPLRAGLKSCWSEPIKDNQGKVLGTFAMYYDTIKSPTELDLELISEAARLASLA
CCCHHHCHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
IERSRAMEFQHLAVKIFDRLPLALVISNSDDSVLYANPAFKHIVLPQDIDIANFNPKVFL
HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCEEEEECCCCCCCCCCCCEEEE
SASQPNELVGLFEHLAQDKMWQGELVGLRGNGEEFYLDLIVSTFREPNGLQPCFAWLFSD
ECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
ISERKKAAKLIKYQANNDSLTGLANRNALFKQIQSLITSDSLTPGFSFMLMDLDNFKQVN
HHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHCC
DTHGHDKGDALLVQVVRQICECLNDTMMFARLGGDEFALLLPGIVNQKELAQLAETINKH
CCCCCCCCHHHHHHHHHHHHHHHHHHHEEHHCCCCCEEEECCCCCCHHHHHHHHHHHHHH
VAKRYVLADGKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTEQM
HHHHEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEHHHH
QLNAERIASLHNQLKQALDQQTFELYYQPIVNATTGLIVRAEVLLRWQLEGQFIPPDEFI
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEEEEEEEECCCCCCCCCCE
PIAENSGLIVDIGRDVRLGAMQTILEMQAHNWPINLSVNVSTFEFWSHELQDAFVDSFAE
EEECCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHH
ITEQLEVTDFPYDRLTLEITESLLMKQHTHLIDVLNGLRLKGINISLDDFGTGYSSLSYL
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECEEEEHHCCCCCHHHHHHH
ANFPIDQIKIDKSFIDRLDEGKRHEALVEAIVRLSHALDLTVTAEGVETESQLKFVMSNH
HCCCHHHEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHH
IQEIQGYLFYKPMPKAAFFALLAKQAELH
HHHHCCEEEECCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AYGVNLPDLLDHTDVKLAHNVSIACYSSILSMLLNGAPLHEILHALVLKIEAQKIGTRG
CCCCCCHHHHCCCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
SVLLLSGDGKRLLLGAAPHLPDSYNQAINGVEIGPNVGSCGTAAYFAKRIIVEDIATHPY
CEEEEECCCCEEEEECCCCCCCHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
WENYKELPLRAGLKSCWSEPIKDNQGKVLGTFAMYYDTIKSPTELDLELISEAARLASLA
CCCHHHCHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
IERSRAMEFQHLAVKIFDRLPLALVISNSDDSVLYANPAFKHIVLPQDIDIANFNPKVFL
HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCEEEEECCCCCCCCCCCCEEEE
SASQPNELVGLFEHLAQDKMWQGELVGLRGNGEEFYLDLIVSTFREPNGLQPCFAWLFSD
ECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
ISERKKAAKLIKYQANNDSLTGLANRNALFKQIQSLITSDSLTPGFSFMLMDLDNFKQVN
HHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHCC
DTHGHDKGDALLVQVVRQICECLNDTMMFARLGGDEFALLLPGIVNQKELAQLAETINKH
CCCCCCCCHHHHHHHHHHHHHHHHHHHEEHHCCCCCEEEECCCCCCHHHHHHHHHHHHHH
VAKRYVLADGKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTEQM
HHHHEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEHHHH
QLNAERIASLHNQLKQALDQQTFELYYQPIVNATTGLIVRAEVLLRWQLEGQFIPPDEFI
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEEEEEEEECCCCCCCCCCE
PIAENSGLIVDIGRDVRLGAMQTILEMQAHNWPINLSVNVSTFEFWSHELQDAFVDSFAE
EEECCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHH
ITEQLEVTDFPYDRLTLEITESLLMKQHTHLIDVLNGLRLKGINISLDDFGTGYSSLSYL
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECEEEEHHCCCCCHHHHHHH
ANFPIDQIKIDKSFIDRLDEGKRHEALVEAIVRLSHALDLTVTAEGVETESQLKFVMSNH
HCCCHHHEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHH
IQEIQGYLFYKPMPKAAFFALLAKQAELH
HHHHCCEEEECCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]