| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is ybeQ [C]
Identifier: 160875151
GI number: 160875151
Start: 2416817
End: 2418337
Strand: Direct
Name: ybeQ [C]
Synonym: Sbal195_2037
Alternate gene names: 160875151
Gene position: 2416817-2418337 (Clockwise)
Preceding gene: 160875150
Following gene: 160875153
Centisome position: 45.2
GC content: 41.16
Gene sequence:
>1521_bases ATGGACGATACAAACACATTATTTAAGAAATTAATACAAGCGATTCGAGCGTGTGACGAAAACACTGTTGCCACTTTGAT TGAGCAGGGTGTTGATGTTGAGCAAGACGGAAACAAAGCATTAATATTGGCCTGCCAACTAGGCTATACATCAATAGTTA AATGTTTGATTGAGGCCGATGCTAATATCCATCAAAATAACAACGAAGCCCTCTGGCTTGCCGTTACACATCGCCATGCG GCGGTTACAGTGGTTTTGATGGCTCAAGGAGCTGACCACATGGATCGTGAAGGGGCTATTTGGGAAGAAGCGACAAAATC ATTCACATCTGAAGATGAATTTACCGCACTTATCGACCTCGGGGCTGAGGCCCTATCCGACATGGATTGGGAACTTCAGT TAGATTTAGCCCTCCATGGAAACAATCAAGTTCTTGCAGACGTTTTAGTTGAAGCGCTGCCAAATGAACCTGGAACATAT CCTGTTCTGATAGCTTTAGATCACGGCAAGCTCACTTTAGCAAAACAGTTTTTGGACAATGGAGTCGATTTCCAACAAGA CAATGAAAGAAGTGCGATTGCATATTATTATGCTTGGATTAATGGTTGCAAATCACTACTACCTCAACTCTTCGCCTGCG GTGCAACAACATCGGGTGCGCTGTATGAATACATTTATGGTAGTCATTTATCCATCAGTGAGCTCGACGCAGAGTTCCTT GCTGAAATGCTTAAGATATCTAAATTTGAAAAAACAACTTGTGAACATGCTGCAGAAATCGCAATTTCCAATAATTTTTT AGATATTGCTGTTGATGCTATTTGCCATCTAGCGGACTTTCCTGCCTCGCTGGAACCGATTTTTTACTCAGCATTTTCAC ATAATGCAAAGGAGCTTTACCCACTACTGATGTCGCTAAAAGCTGTTATTAGCTTTAGTAATGATGATTTACCTTGGCTA GATGACTTTATTATCGATTGTACCGACCGTACGTTGATTTCTTACCTTTTAGCACAAGTCGGCCCATCTTCGTTACTCAA AGTAGAAAAGTTACTCGACAAAGCAATAGAAGAAAAAGACTGGGAATGGGTAAAATATCTTGTTTGCCTTGGAGTAAGAC CATCTCTAATTTATGGCTTTGATATGGCGATTGTGGCGCTTATTGACAGCATCGAGCATGACAGACCTTATCAGTTTACA ACCTACTTACAAGTCGCTGAAAAAGGTGGCGGATGGGCCGCAAAAAATGTTGCCGATAGATATTTGGAAGGAGATGGCAT TGAAAAAAATAAACAACAGGCTGCTTACTGGTATACCAAAGCTGCAGAATATGGATATATATCGTTAAACCTAATGACAA TGCTAGCCTTAGGTGATGGTATTGAACAGGATAAGCCATCGGCCATTCATTTGTACCGCCTGTTTTCCAATGATGCTAAT TGCATTCGCTCTGCTGAAATGCAAGAAATGTATGACCAAGATGCATTAGAGAGGATCTTGGGTAATGCTTCCGTCAGTTA A
Upstream 100 bases:
>100_bases ACTTAGGGGCTGTACAGATGTGCTGTCTGATGAGCAATTTGCCCTTTTCAAGTTTTGTAATGTTATTGAGATAGCAAACG ACATGAGAGTTGAATACACA
Downstream 100 bases:
>100_bases GAAAATTTTAAGACCACAAATAATTAACCCTCTAGTTTTAGGAGAGTCAATAATGGTGTTGTGCTCATAAGCTTTTAATT TTCAAAGTTTGCGTTGATCT
Product: Sel1 domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 506; Mature: 506
Protein sequence:
>506_residues MDDTNTLFKKLIQAIRACDENTVATLIEQGVDVEQDGNKALILACQLGYTSIVKCLIEADANIHQNNNEALWLAVTHRHA AVTVVLMAQGADHMDREGAIWEEATKSFTSEDEFTALIDLGAEALSDMDWELQLDLALHGNNQVLADVLVEALPNEPGTY PVLIALDHGKLTLAKQFLDNGVDFQQDNERSAIAYYYAWINGCKSLLPQLFACGATTSGALYEYIYGSHLSISELDAEFL AEMLKISKFEKTTCEHAAEIAISNNFLDIAVDAICHLADFPASLEPIFYSAFSHNAKELYPLLMSLKAVISFSNDDLPWL DDFIIDCTDRTLISYLLAQVGPSSLLKVEKLLDKAIEEKDWEWVKYLVCLGVRPSLIYGFDMAIVALIDSIEHDRPYQFT TYLQVAEKGGGWAAKNVADRYLEGDGIEKNKQQAAYWYTKAAEYGYISLNLMTMLALGDGIEQDKPSAIHLYRLFSNDAN CIRSAEMQEMYDQDALERILGNASVS
Sequences:
>Translated_506_residues MDDTNTLFKKLIQAIRACDENTVATLIEQGVDVEQDGNKALILACQLGYTSIVKCLIEADANIHQNNNEALWLAVTHRHA AVTVVLMAQGADHMDREGAIWEEATKSFTSEDEFTALIDLGAEALSDMDWELQLDLALHGNNQVLADVLVEALPNEPGTY PVLIALDHGKLTLAKQFLDNGVDFQQDNERSAIAYYYAWINGCKSLLPQLFACGATTSGALYEYIYGSHLSISELDAEFL AEMLKISKFEKTTCEHAAEIAISNNFLDIAVDAICHLADFPASLEPIFYSAFSHNAKELYPLLMSLKAVISFSNDDLPWL DDFIIDCTDRTLISYLLAQVGPSSLLKVEKLLDKAIEEKDWEWVKYLVCLGVRPSLIYGFDMAIVALIDSIEHDRPYQFT TYLQVAEKGGGWAAKNVADRYLEGDGIEKNKQQAAYWYTKAAEYGYISLNLMTMLALGDGIEQDKPSAIHLYRLFSNDAN CIRSAEMQEMYDQDALERILGNASVS >Mature_506_residues MDDTNTLFKKLIQAIRACDENTVATLIEQGVDVEQDGNKALILACQLGYTSIVKCLIEADANIHQNNNEALWLAVTHRHA AVTVVLMAQGADHMDREGAIWEEATKSFTSEDEFTALIDLGAEALSDMDWELQLDLALHGNNQVLADVLVEALPNEPGTY PVLIALDHGKLTLAKQFLDNGVDFQQDNERSAIAYYYAWINGCKSLLPQLFACGATTSGALYEYIYGSHLSISELDAEFL AEMLKISKFEKTTCEHAAEIAISNNFLDIAVDAICHLADFPASLEPIFYSAFSHNAKELYPLLMSLKAVISFSNDDLPWL DDFIIDCTDRTLISYLLAQVGPSSLLKVEKLLDKAIEEKDWEWVKYLVCLGVRPSLIYGFDMAIVALIDSIEHDRPYQFT TYLQVAEKGGGWAAKNVADRYLEGDGIEKNKQQAAYWYTKAAEYGYISLNLMTMLALGDGIEQDKPSAIHLYRLFSNDAN CIRSAEMQEMYDQDALERILGNASVS
Specific function: Unknown
COG id: COG0666
COG function: function code R; FOG: Ankyrin repeat
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56329; Mature: 56329
Theoretical pI: Translated: 4.20; Mature: 4.20
Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDTNTLFKKLIQAIRACDENTVATLIEQGVDVEQDGNKALILACQLGYTSIVKCLIEAD CCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHCC ANIHQNNNEALWLAVTHRHAAVTVVLMAQGADHMDREGAIWEEATKSFTSEDEFTALIDL CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHH GAEALSDMDWELQLDLALHGNNQVLADVLVEALPNEPGTYPVLIALDHGKLTLAKQFLDN CHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHC GVDFQQDNERSAIAYYYAWINGCKSLLPQLFACGATTSGALYEYIYGSHLSISELDAEFL CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHH AEMLKISKFEKTTCEHAAEIAISNNFLDIAVDAICHLADFPASLEPIFYSAFSHNAKELY HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHH PLLMSLKAVISFSNDDLPWLDDFIIDCTDRTLISYLLAQVGPSSLLKVEKLLDKAIEEKD HHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC WEWVKYLVCLGVRPSLIYGFDMAIVALIDSIEHDRPYQFTTYLQVAEKGGGWAAKNVADR HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHH YLEGDGIEKNKQQAAYWYTKAAEYGYISLNLMTMLALGDGIEQDKPSAIHLYRLFSNDAN HHCCCCCCCCCHHHHHEEEECCCCCEEEHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHH CIRSAEMQEMYDQDALERILGNASVS HHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MDDTNTLFKKLIQAIRACDENTVATLIEQGVDVEQDGNKALILACQLGYTSIVKCLIEAD CCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHCC ANIHQNNNEALWLAVTHRHAAVTVVLMAQGADHMDREGAIWEEATKSFTSEDEFTALIDL CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHH GAEALSDMDWELQLDLALHGNNQVLADVLVEALPNEPGTYPVLIALDHGKLTLAKQFLDN CHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHC GVDFQQDNERSAIAYYYAWINGCKSLLPQLFACGATTSGALYEYIYGSHLSISELDAEFL CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHH AEMLKISKFEKTTCEHAAEIAISNNFLDIAVDAICHLADFPASLEPIFYSAFSHNAKELY HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHH PLLMSLKAVISFSNDDLPWLDDFIIDCTDRTLISYLLAQVGPSSLLKVEKLLDKAIEEKD HHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC WEWVKYLVCLGVRPSLIYGFDMAIVALIDSIEHDRPYQFTTYLQVAEKGGGWAAKNVADR HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHH YLEGDGIEKNKQQAAYWYTKAAEYGYISLNLMTMLALGDGIEQDKPSAIHLYRLFSNDAN HHCCCCCCCCCHHHHHEEEECCCCCEEEHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHH CIRSAEMQEMYDQDALERILGNASVS HHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA