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The map label for this gene is intR [H]

Identifier: 160875114

GI number: 160875114

Start: 2384295

End: 2385587

Strand: Reverse

Name: intR [H]

Synonym: Sbal195_2000

Alternate gene names: 160875114

Gene position: 2385587-2384295 (Counterclockwise)

Preceding gene: 160875115

Following gene: 160875111

Centisome position: 44.61

GC content: 43.08

Gene sequence:

>1293_bases
ATGATTGAACTACCAAAGGGAGTCGAAAAGCTCCCTTCTGGCATCCATATTCACGGTGAAACGGTACGCATTGATTTTCG
TTACAATGGCGAACGTTGCCGTGAGCCATTGGCTGGCCATTACAAGATCACTAAGTCTACGATTAAGTATGCTGAAAATA
AGCGTACAACGATTCTGACTGAGATAGCCGAGAATCGATTCGACTATCTCGCCCACTTTCCTAACTCAGCAAAGGCGGCA
AGGTTTGCGGGGATCTGCCAGAAAAAACGTTATGTGGCAGAAGCGGTTAAGCTTTGGCTGGATGTGCAAGAAGCTACAAA
AGCCCAAAGCACATTCAAAAATTACAAAGTTAAAGCACAGCACGTACTCAATAAATGGGGAGACAGAAAGCTTACTGATA
TCACCAAATCACAAATGGAACTTTTTCAAGTAGAATTGCTGAAAAGTGGCCTAGCGCCAAAAACCGTAAATGACATTTTC
ACTATCATTCGGGGCGTATGGTCAGAAGCTTTTCATGAAGGCACGCTCAAAACCAATCCACTTGATCGAGTGAGAAATAT
CGAACGTGACAACCTAGAAGAAACAGCTGATCCGTTTACTCGCGAAGAACTGCTGTGCATTGAGACGATAGACACATCAC
GTCAGTGTGATATCAACATGATCATGTTCTGGTGCTGGTCTGGATTATCACTCTCAGAGATCATCGCGCTGGCTTGGGAG
GATATAGATACTGAGACTTGGACGGTGAAAGTACAGCGTGCGAAGGTGTTAAATCAATATAAGGTACCTAAAGAGCGTGG
TCGCATACGTGTTATTGAGTTATTAGAACCTGCAAAGTTTTGGCTGCAACGCCAAATGGAACACACCTTTAATCAGCATG
CGACTAAATACACCATAAAACAACGTGACAACATTACGAATAAACAAGAGAGTATTAGGCTCGTTTTTCTCAATGGGAAA
AGTGGTTTGCCTTGGTATGATCATTCTGTTCGTCGCTGGTTTACCGGTATTTTGAATGGTGCCAAGTTACGCCATCGTGG
ACCGAATCAATGTCGCCATACCTTTGCAAGTCAGATGCTTTCTAACTACGTACCACTTGAATGGGTTGCAAGACAATTAG
GCCATAGCGATACCACAATGATTAAAAAACATTATGGCAAATGGATACCTAAGGACTCACTAAGAATGGCTAATCGTATC
TCTGAAATGATGGGTTTTAGTGAGGATAATAACGGACTAGAACACCCTGAAATGGTCCCAAATAGGTCCCAGAGCAACAA
AGGGAACCAGTAA

Upstream 100 bases:

>100_bases
GAGGCGTTTGGTTGGAAGGTAGGCAATGGCGCTATGACCCTATTGGACGCATAGTTTACAACATCAATGAAATTGAACAG
TGGATGGAAGGAGCCGCTTA

Downstream 100 bases:

>100_bases
GATACTGATTCCCTTTGCTTTAATTTGGCGGTGAGAGAGGGAGTCGAACCCTGAACAGTGGGAATGAGGTCCTATCATAT
ACTTGATATTGCTACGTATT

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MIELPKGVEKLPSGIHIHGETVRIDFRYNGERCREPLAGHYKITKSTIKYAENKRTTILTEIAENRFDYLAHFPNSAKAA
RFAGICQKKRYVAEAVKLWLDVQEATKAQSTFKNYKVKAQHVLNKWGDRKLTDITKSQMELFQVELLKSGLAPKTVNDIF
TIIRGVWSEAFHEGTLKTNPLDRVRNIERDNLEETADPFTREELLCIETIDTSRQCDINMIMFWCWSGLSLSEIIALAWE
DIDTETWTVKVQRAKVLNQYKVPKERGRIRVIELLEPAKFWLQRQMEHTFNQHATKYTIKQRDNITNKQESIRLVFLNGK
SGLPWYDHSVRRWFTGILNGAKLRHRGPNQCRHTFASQMLSNYVPLEWVARQLGHSDTTMIKKHYGKWIPKDSLRMANRI
SEMMGFSEDNNGLEHPEMVPNRSQSNKGNQ

Sequences:

>Translated_430_residues
MIELPKGVEKLPSGIHIHGETVRIDFRYNGERCREPLAGHYKITKSTIKYAENKRTTILTEIAENRFDYLAHFPNSAKAA
RFAGICQKKRYVAEAVKLWLDVQEATKAQSTFKNYKVKAQHVLNKWGDRKLTDITKSQMELFQVELLKSGLAPKTVNDIF
TIIRGVWSEAFHEGTLKTNPLDRVRNIERDNLEETADPFTREELLCIETIDTSRQCDINMIMFWCWSGLSLSEIIALAWE
DIDTETWTVKVQRAKVLNQYKVPKERGRIRVIELLEPAKFWLQRQMEHTFNQHATKYTIKQRDNITNKQESIRLVFLNGK
SGLPWYDHSVRRWFTGILNGAKLRHRGPNQCRHTFASQMLSNYVPLEWVARQLGHSDTTMIKKHYGKWIPKDSLRMANRI
SEMMGFSEDNNGLEHPEMVPNRSQSNKGNQ
>Mature_430_residues
MIELPKGVEKLPSGIHIHGETVRIDFRYNGERCREPLAGHYKITKSTIKYAENKRTTILTEIAENRFDYLAHFPNSAKAA
RFAGICQKKRYVAEAVKLWLDVQEATKAQSTFKNYKVKAQHVLNKWGDRKLTDITKSQMELFQVELLKSGLAPKTVNDIF
TIIRGVWSEAFHEGTLKTNPLDRVRNIERDNLEETADPFTREELLCIETIDTSRQCDINMIMFWCWSGLSLSEIIALAWE
DIDTETWTVKVQRAKVLNQYKVPKERGRIRVIELLEPAKFWLQRQMEHTFNQHATKYTIKQRDNITNKQESIRLVFLNGK
SGLPWYDHSVRRWFTGILNGAKLRHRGPNQCRHTFASQMLSNYVPLEWVARQLGHSDTTMIKKHYGKWIPKDSLRMANRI
SEMMGFSEDNNGLEHPEMVPNRSQSNKGNQ

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=403, Percent_Identity=30.0248138957816, Blast_Score=170, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR022000
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 50106; Mature: 50106

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIELPKGVEKLPSGIHIHGETVRIDFRYNGERCREPLAGHYKITKSTIKYAENKRTTILT
CCCCCCCHHHCCCCEEEECCEEEEEEEECCHHHCCCCCCCEEEHHHHHHHHCCCCHHHHH
EIAENRFDYLAHFPNSAKAARFAGICQKKRYVAEAVKLWLDVQEATKAQSTFKNYKVKAQ
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HVLNKWGDRKLTDITKSQMELFQVELLKSGLAPKTVNDIFTIIRGVWSEAFHEGTLKTNP
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
LDRVRNIERDNLEETADPFTREELLCIETIDTSRQCDINMIMFWCWSGLSLSEIIALAWE
HHHHHCCCCCCHHHHCCCCCHHHEEEEEECCCCCCCCHHEEEEECCCCCCHHHHHHHHHH
DIDTETWTVKVQRAKVLNQYKVPKERGRIRVIELLEPAKFWLQRQMEHTFNQHATKYTIK
CCCCCEEEEEEHHHHHHHHHCCCHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHEEEHH
QRDNITNKQESIRLVFLNGKSGLPWYDHSVRRWFTGILNGAKLRHRGPNQCRHTFASQML
HCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHH
SNYVPLEWVARQLGHSDTTMIKKHYGKWIPKDSLRMANRISEMMGFSEDNNGLEHPEMVP
HCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
NRSQSNKGNQ
CCCCCCCCCC
>Mature Secondary Structure
MIELPKGVEKLPSGIHIHGETVRIDFRYNGERCREPLAGHYKITKSTIKYAENKRTTILT
CCCCCCCHHHCCCCEEEECCEEEEEEEECCHHHCCCCCCCEEEHHHHHHHHCCCCHHHHH
EIAENRFDYLAHFPNSAKAARFAGICQKKRYVAEAVKLWLDVQEATKAQSTFKNYKVKAQ
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HVLNKWGDRKLTDITKSQMELFQVELLKSGLAPKTVNDIFTIIRGVWSEAFHEGTLKTNP
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
LDRVRNIERDNLEETADPFTREELLCIETIDTSRQCDINMIMFWCWSGLSLSEIIALAWE
HHHHHCCCCCCHHHHCCCCCHHHEEEEEECCCCCCCCHHEEEEECCCCCCHHHHHHHHHH
DIDTETWTVKVQRAKVLNQYKVPKERGRIRVIELLEPAKFWLQRQMEHTFNQHATKYTIK
CCCCCEEEEEEHHHHHHHHHCCCHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHEEEHH
QRDNITNKQESIRLVFLNGKSGLPWYDHSVRRWFTGILNGAKLRHRGPNQCRHTFASQML
HCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHH
SNYVPLEWVARQLGHSDTTMIKKHYGKWIPKDSLRMANRISEMMGFSEDNNGLEHPEMVP
HCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
NRSQSNKGNQ
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]