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The map label for this gene is ymfK [C]

Identifier: 160875085

GI number: 160875085

Start: 2350740

End: 2351429

Strand: Reverse

Name: ymfK [C]

Synonym: Sbal195_1970

Alternate gene names: 160875085

Gene position: 2351429-2350740 (Counterclockwise)

Preceding gene: 160875109

Following gene: 160875084

Centisome position: 43.97

GC content: 39.71

Gene sequence:

>690_bases
ATGCCGATATGGCATAATTTGGATATGAAAATGAATTGGTATGATCTGGTTAAGTCCAGAATGAAAGAAATTGGTATTAC
GCAAGATGTGCTGGCAGAGCGCATGAATATGGCTCAGCCAACTATTGCTAGATATCTAAATAAAAAACGAGAACCAGATT
TGGAAACCATTGCATCAATAATGAAGCATGTAGATCTTAGTCATATGGTTTTAACATCAGACGGATTAGTCGAGTACCCT
GATTCTGCTATTGAAAACACCAGAGTTGTCGAAAGAAATATGTCATATCAACGCGCATTTCCAGTAATCAGCTATGTACA
AGCAGGAGCTTGGGCAGAAGCGATTGAGTCAGTTCCTGCGCTTGCTTCAGATGAATGGTATGAAACCACAGAACGAACCG
GTGAGAAGTGTTTTTGGCTGAGAGTTTCTGGCGATTCAATGACAGCGACATCTGGTATTAGTTTCCCTGAGGGAACTTTA
ATCCTTATTGATACTGAACGCGATCACCAAAGTGGCTCCTTTGTAGTTGCAAAATTAACTGACGTTAACGAGGCCACCTT
TAAAAAACTGGTGATGGATGCAGGACAAAAATTCCTTAAACCGCTAAACAACGCATACCCTACGCTGCCAATTAATGGAA
ATTGTAAGATTATTGGTGTTGTTGTGGATGCTAAAATTAAGATTTTCTAA

Upstream 100 bases:

>100_bases
TGTAATGTTTTAGTTTGTTCATATGAACCTCCGCAGCAATATATACCATTACGGTATTTTTGACGCAACGAAAATATACC
GTATCGGTTGTTTTTATAAC

Downstream 100 bases:

>100_bases
CTAGTTAGAATTTTGAATAATAAAGGAAAAGTGGATTGGACGAGCAACGACTGCTCAGCAATGAGACAGTACAAGTTAGA
CACATGCTGTTTACTGTAGA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: ORF-96 protein [H]

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MPIWHNLDMKMNWYDLVKSRMKEIGITQDVLAERMNMAQPTIARYLNKKREPDLETIASIMKHVDLSHMVLTSDGLVEYP
DSAIENTRVVERNMSYQRAFPVISYVQAGAWAEAIESVPALASDEWYETTERTGEKCFWLRVSGDSMTATSGISFPEGTL
ILIDTERDHQSGSFVVAKLTDVNEATFKKLVMDAGQKFLKPLNNAYPTLPINGNCKIIGVVVDAKIKIF

Sequences:

>Translated_229_residues
MPIWHNLDMKMNWYDLVKSRMKEIGITQDVLAERMNMAQPTIARYLNKKREPDLETIASIMKHVDLSHMVLTSDGLVEYP
DSAIENTRVVERNMSYQRAFPVISYVQAGAWAEAIESVPALASDEWYETTERTGEKCFWLRVSGDSMTATSGISFPEGTL
ILIDTERDHQSGSFVVAKLTDVNEATFKKLVMDAGQKFLKPLNNAYPTLPINGNCKIIGVVVDAKIKIF
>Mature_228_residues
PIWHNLDMKMNWYDLVKSRMKEIGITQDVLAERMNMAQPTIARYLNKKREPDLETIASIMKHVDLSHMVLTSDGLVEYPD
SAIENTRVVERNMSYQRAFPVISYVQAGAWAEAIESVPALASDEWYETTERTGEKCFWLRVSGDSMTATSGISFPEGTLI
LIDTERDHQSGSFVVAKLTDVNEATFKKLVMDAGQKFLKPLNNAYPTLPINGNCKIIGVVVDAKIKIF

Specific function: May control the expression of the integrase and inhibit excision of the mobile element R391, and regulate the expression of other genes as well [H]

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787391, Length=149, Percent_Identity=38.255033557047, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 25838; Mature: 25707

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIWHNLDMKMNWYDLVKSRMKEIGITQDVLAERMNMAQPTIARYLNKKREPDLETIASI
CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHH
MKHVDLSHMVLTSDGLVEYPDSAIENTRVVERNMSYQRAFPVISYVQAGAWAEAIESVPA
HHHCCHHHEEEECCCCEECCCHHHHCCHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHCCC
LASDEWYETTERTGEKCFWLRVSGDSMTATSGISFPEGTLILIDTERDHQSGSFVVAKLT
CCCCHHHHHHHCCCCEEEEEEECCCCEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEEC
DVNEATFKKLVMDAGQKFLKPLNNAYPTLPINGNCKIIGVVVDAKIKIF
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEEEEEEEEEC
>Mature Secondary Structure 
PIWHNLDMKMNWYDLVKSRMKEIGITQDVLAERMNMAQPTIARYLNKKREPDLETIASI
CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHH
MKHVDLSHMVLTSDGLVEYPDSAIENTRVVERNMSYQRAFPVISYVQAGAWAEAIESVPA
HHHCCHHHEEEECCCCEECCCHHHHCCHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHCCC
LASDEWYETTERTGEKCFWLRVSGDSMTATSGISFPEGTLILIDTERDHQSGSFVVAKLT
CCCCHHHHHHHCCCCEEEEEEECCCCEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEEC
DVNEATFKKLVMDAGQKFLKPLNNAYPTLPINGNCKIIGVVVDAKIKIF
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157923; 12193633 [H]