| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is bioC [H]
Identifier: 160874912
GI number: 160874912
Start: 2158655
End: 2159779
Strand: Direct
Name: bioC [H]
Synonym: Sbal195_1797
Alternate gene names: 160874912
Gene position: 2158655-2159779 (Clockwise)
Preceding gene: 160874911
Following gene: 160874913
Centisome position: 40.37
GC content: 48.71
Gene sequence:
>1125_bases ATGCCAAGCCCGGTTAAATCCAGCAAGCCCAACGCGAGTGAACTAAGCTCTAACGCGCTCCAGTCTAGTGAGCCCAAGTC GAGTGAGTCCAACTCTTGCGGGTCAACATTTCACGAGTTGAATGTGAGCGAATCTGCTGTAATGCAAGCTTTTGAAAAAC CAGCTATTGGAAAACGAGCAATTGACAAAGAATCCAATGTTCACGGTGCTCAGATTGCTGAACGATTCTCCGCAGCGGCC CATAGTTATCAAGACCATAATCAGTTACAGCGTCTGAGCGCCGCCAGTTTACTCAGTGAGTTTACCGCCAAAGGTCATCT GTTAGATATTGGCGCAGGCCCTGGGACAGATTTTGCGGCGTATCACTGTGCGCATCAATCTGAACATAACTTTGATAATG AATCGGCACATCAATCAGGGTATCAATCAGAGCATGGTTCGATACAAAATCCACCGACAACTGTGTTTGCTGTGGATATC GCCCTTGGCATGTTACACAAGCTAAAACAAACTTATCCCGATTATCACGGCTTTTGTGCCGATGCCGAGTGCTTACCCTT TGTCGATGGCTGCATCGATGTGATTTATTCGAATCTGGCTTTGCAGTGGTGTGCGAATTTTCCCGCCGCGGTAGCCGAAA TGGCGCGAGTGCTCAAGCCGGATGGCGAGTGTCATTTGAGCTTAGTGGCGCAGGGGAGTTTGAATCAATTAGCCGAATTA GGCTTAAGAGTGAATGACTTTTCGACATTGGAGGCGCTAAAAGCGGCATTTAAACTCGATACATGGCAGTTCTTAGAGGT GCAGCTCATTCCTATGACAGTGCATTTTGATACTCTCAAAGCATTGCTCTATTCCATCAAAGGGGTGGGCGCCTCGGTGC AATCGGCCAGTGCAACCCATTCAGCCAATTCAATCAGTTTAGCCAATTCAATCAGTTTAGATAATTCAACGATTCAGTCA GCAGGAGAGGTTGCTGGCGCAATAGCCGCTGCAGAATTAGCCCCACGGCTGCGTGGTCGCCAAGATTGGCAGGCATTGCA GGCCAAAGCCGAATCCTTACGTGTACCCCAAGGTTTGCCGTTAACCTACCAGATAGTGCAGATACGTGCTCGGCGCAGGA TGTAA
Upstream 100 bases:
>100_bases ATGACTGAGCGACAAGCGGCAGATGATCACAGATAAATGTACGCTATAGAACGAGTTATTCTATTGAAATTTAAGTTTTT ATGGTCGAGTGTTAACTGCA
Downstream 100 bases:
>100_bases CTGTTGCACATTATGTTCTAGCTACAGCAGTATTGATGTACACATGTTTAGCATTGGTTAACGATAGGGACTTTGATTTG TGGACTTGTGGATTTAAAGG
Product: type 11 methyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MPSPVKSSKPNASELSSNALQSSEPKSSESNSCGSTFHELNVSESAVMQAFEKPAIGKRAIDKESNVHGAQIAERFSAAA HSYQDHNQLQRLSAASLLSEFTAKGHLLDIGAGPGTDFAAYHCAHQSEHNFDNESAHQSGYQSEHGSIQNPPTTVFAVDI ALGMLHKLKQTYPDYHGFCADAECLPFVDGCIDVIYSNLALQWCANFPAAVAEMARVLKPDGECHLSLVAQGSLNQLAEL GLRVNDFSTLEALKAAFKLDTWQFLEVQLIPMTVHFDTLKALLYSIKGVGASVQSASATHSANSISLANSISLDNSTIQS AGEVAGAIAAAELAPRLRGRQDWQALQAKAESLRVPQGLPLTYQIVQIRARRRM
Sequences:
>Translated_374_residues MPSPVKSSKPNASELSSNALQSSEPKSSESNSCGSTFHELNVSESAVMQAFEKPAIGKRAIDKESNVHGAQIAERFSAAA HSYQDHNQLQRLSAASLLSEFTAKGHLLDIGAGPGTDFAAYHCAHQSEHNFDNESAHQSGYQSEHGSIQNPPTTVFAVDI ALGMLHKLKQTYPDYHGFCADAECLPFVDGCIDVIYSNLALQWCANFPAAVAEMARVLKPDGECHLSLVAQGSLNQLAEL GLRVNDFSTLEALKAAFKLDTWQFLEVQLIPMTVHFDTLKALLYSIKGVGASVQSASATHSANSISLANSISLDNSTIQS AGEVAGAIAAAELAPRLRGRQDWQALQAKAESLRVPQGLPLTYQIVQIRARRRM >Mature_373_residues PSPVKSSKPNASELSSNALQSSEPKSSESNSCGSTFHELNVSESAVMQAFEKPAIGKRAIDKESNVHGAQIAERFSAAAH SYQDHNQLQRLSAASLLSEFTAKGHLLDIGAGPGTDFAAYHCAHQSEHNFDNESAHQSGYQSEHGSIQNPPTTVFAVDIA LGMLHKLKQTYPDYHGFCADAECLPFVDGCIDVIYSNLALQWCANFPAAVAEMARVLKPDGECHLSLVAQGSLNQLAELG LRVNDFSTLEALKAAFKLDTWQFLEVQLIPMTVHFDTLKALLYSIKGVGASVQSASATHSANSISLANSISLDNSTIQSA GEVAGAIAAAELAPRLRGRQDWQALQAKAESLRVPQGLPLTYQIVQIRARRRM
Specific function: BioC is involved in an early, but chemically unexplored, step in the conversion of pimelic acid to biotin [H]
COG id: COG0500
COG function: function code QR; SAM-dependent methyltransferases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily [H]
Homologues:
Organism=Escherichia coli, GI1786994, Length=218, Percent_Identity=28.4403669724771, Blast_Score=83, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011814 - InterPro: IPR013216 [H]
Pfam domain/function: PF08241 Methyltransf_11 [H]
EC number: NA
Molecular weight: Translated: 40258; Mature: 40127
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSPVKSSKPNASELSSNALQSSEPKSSESNSCGSTFHELNVSESAVMQAFEKPAIGKRA CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCHHH IDKESNVHGAQIAERFSAAAHSYQDHNQLQRLSAASLLSEFTAKGHLLDIGAGPGTDFAA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHH YHCAHQSEHNFDNESAHQSGYQSEHGSIQNPPTTVFAVDIALGMLHKLKQTYPDYHGFCA HHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCC DAECLPFVDGCIDVIYSNLALQWCANFPAAVAEMARVLKPDGECHLSLVAQGSLNQLAEL CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHC GLRVNDFSTLEALKAAFKLDTWQFLEVQLIPMTVHFDTLKALLYSIKGVGASVQSASATH CCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHCCCCCHHHCCCCC SANSISLANSISLDNSTIQSAGEVAGAIAAAELAPRLRGRQDWQALQAKAESLRVPQGLP CCCCEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC LTYQIVQIRARRRM HHHHHHHHHHHHCC >Mature Secondary Structure PSPVKSSKPNASELSSNALQSSEPKSSESNSCGSTFHELNVSESAVMQAFEKPAIGKRA CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCHHH IDKESNVHGAQIAERFSAAAHSYQDHNQLQRLSAASLLSEFTAKGHLLDIGAGPGTDFAA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHH YHCAHQSEHNFDNESAHQSGYQSEHGSIQNPPTTVFAVDIALGMLHKLKQTYPDYHGFCA HHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCC DAECLPFVDGCIDVIYSNLALQWCANFPAAVAEMARVLKPDGECHLSLVAQGSLNQLAEL CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHC GLRVNDFSTLEALKAAFKLDTWQFLEVQLIPMTVHFDTLKALLYSIKGVGASVQSASATH CCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHCCCCCHHHCCCCC SANSISLANSISLDNSTIQSAGEVAGAIAAAELAPRLRGRQDWQALQAKAESLRVPQGLP CCCCEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC LTYQIVQIRARRRM HHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9063571 [H]