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The map label for this gene is motY [H]

Identifier: 160874894

GI number: 160874894

Start: 2132517

End: 2133386

Strand: Direct

Name: motY [H]

Synonym: Sbal195_1779

Alternate gene names: 160874894

Gene position: 2132517-2133386 (Clockwise)

Preceding gene: 160874892

Following gene: 160874895

Centisome position: 39.88

GC content: 47.01

Gene sequence:

>870_bases
ATGTGGCGAAAACTGATATTAGTATCAATTTTATGCGTTCCAGCAACTGCAATGGCAGAGTTGCGCCATTATGTCGCCTC
TTTAAGTGATTCCCAATGGCGAGTGAGTGAGAATTCTCCCATCGTTTGTCGCCTCGAGCATGATATCCCCTCCTACGGTA
AAGCAATTTTTACCAGCGAAGCGGGTAAGCAGCAGAATATGAATTTTACCTTAGACATGTGGGTAAAACCGGACCAAGTC
ACGCAAGCTAAGTTAATTAGTCGCGCGCCGCAGTGGCGGCCGGGAGTGGTCTCAAAAGAAATCACTTCACTGCATTATCA
AAAGTACTTTAATGGTGAGGTGCCTAAACGTGCCGCTTGGTCTATGTTGGCTGAGTTGAGTCGCGGTATGGAACCGACGT
TTTACTATGCTGATTGGTATAATGAGTCAAATAAGATCGCTGTGGGTTTGTCATCGGTTAATTTTGGCCGTAAATACAGC
GAGTTCAAAGCTTGTCTAGCGCACCTGTTGCCCTATAGCTTTGAAGATATCGCATTTACTGTGCTGAACTATGATGAAGG
CGGAACCGATTTAACTCGTTTCTCCCAGCAGCAACTGTCTCGGGTTCAAGAATACTTAGCCTATGATCCTTTGGTGGAGT
TAGTGCTGGTGGATGCGTATACCGACAGTTATGGTGGCCGTTCAGTTAACCAAAAAGTCTCGGATAAACGGGCGGAGTCG
GTAAAAGATTTCTTTGTTGCCAGCGGTATTCCGCAAGATCGTATCGTTACTGTGGGGCATGGTGAGCGCCGTCATGTGGC
TTCGAACGATGATATGGACGAAAGGGCACGTAACCGCCGCGTTGTGATACGGATCAGTAAGCCTTTGTAG

Upstream 100 bases:

>100_bases
GTGTTGGGGTGTGTCATGCTTGATTGATGGTTTTATGAGCTAAAGGAACTAAATAGTTTGCCGATAAAGCCATGTAACCG
ATTAAACATGAGTAAAGGCT

Downstream 100 bases:

>100_bases
TGTATTTGTGCAGTGTTTAACCTGTGCCACATCAATATAGTTAAGCCCAATCCAATGCCAAGTCACTGACTTGGCATTGT
TATTTCTAGATGCGGAGGTG

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: Polar flagellum motor protein [H]

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MWRKLILVSILCVPATAMAELRHYVASLSDSQWRVSENSPIVCRLEHDIPSYGKAIFTSEAGKQQNMNFTLDMWVKPDQV
TQAKLISRAPQWRPGVVSKEITSLHYQKYFNGEVPKRAAWSMLAELSRGMEPTFYYADWYNESNKIAVGLSSVNFGRKYS
EFKACLAHLLPYSFEDIAFTVLNYDEGGTDLTRFSQQQLSRVQEYLAYDPLVELVLVDAYTDSYGGRSVNQKVSDKRAES
VKDFFVASGIPQDRIVTVGHGERRHVASNDDMDERARNRRVVIRISKPL

Sequences:

>Translated_289_residues
MWRKLILVSILCVPATAMAELRHYVASLSDSQWRVSENSPIVCRLEHDIPSYGKAIFTSEAGKQQNMNFTLDMWVKPDQV
TQAKLISRAPQWRPGVVSKEITSLHYQKYFNGEVPKRAAWSMLAELSRGMEPTFYYADWYNESNKIAVGLSSVNFGRKYS
EFKACLAHLLPYSFEDIAFTVLNYDEGGTDLTRFSQQQLSRVQEYLAYDPLVELVLVDAYTDSYGGRSVNQKVSDKRAES
VKDFFVASGIPQDRIVTVGHGERRHVASNDDMDERARNRRVVIRISKPL
>Mature_289_residues
MWRKLILVSILCVPATAMAELRHYVASLSDSQWRVSENSPIVCRLEHDIPSYGKAIFTSEAGKQQNMNFTLDMWVKPDQV
TQAKLISRAPQWRPGVVSKEITSLHYQKYFNGEVPKRAAWSMLAELSRGMEPTFYYADWYNESNKIAVGLSSVNFGRKYS
EFKACLAHLLPYSFEDIAFTVLNYDEGGTDLTRFSQQQLSRVQEYLAYDPLVELVLVDAYTDSYGGRSVNQKVSDKRAES
VKDFFVASGIPQDRIVTVGHGERRHVASNDDMDERARNRRVVIRISKPL

Specific function: Plays the role of a stator in the sodium flagellar motor, stabilizing the force-generating unit through direct interaction with the cell wall. Involved in adherence and invasion of fish cell line [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 33007; Mature: 33007

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRKLILVSILCVPATAMAELRHYVASLSDSQWRVSENSPIVCRLEHDIPSYGKAIFTSE
CCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCEEEECC
AGKQQNMNFTLDMWVKPDQVTQAKLISRAPQWRPGVVSKEITSLHYQKYFNGEVPKRAAW
CCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
SMLAELSRGMEPTFYYADWYNESNKIAVGLSSVNFGRKYSEFKACLAHLLPYSFEDIAFT
HHHHHHHCCCCCEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEE
VLNYDEGGTDLTRFSQQQLSRVQEYLAYDPLVELVLVDAYTDSYGGRSVNQKVSDKRAES
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCCHHHHHHHHHHHH
VKDFFVASGIPQDRIVTVGHGERRHVASNDDMDERARNRRVVIRISKPL
HHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCEEEEEECCCC
>Mature Secondary Structure
MWRKLILVSILCVPATAMAELRHYVASLSDSQWRVSENSPIVCRLEHDIPSYGKAIFTSE
CCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCEEEECC
AGKQQNMNFTLDMWVKPDQVTQAKLISRAPQWRPGVVSKEITSLHYQKYFNGEVPKRAAW
CCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
SMLAELSRGMEPTFYYADWYNESNKIAVGLSSVNFGRKYSEFKACLAHLLPYSFEDIAFT
HHHHHHHCCCCCEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEE
VLNYDEGGTDLTRFSQQQLSRVQEYLAYDPLVELVLVDAYTDSYGGRSVNQKVSDKRAES
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCCHHHHHHHHHHHH
VKDFFVASGIPQDRIVTVGHGERRHVASNDDMDERARNRRVVIRISKPL
HHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA