| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is hxuC [H]
Identifier: 160874174
GI number: 160874174
Start: 1248413
End: 1250503
Strand: Direct
Name: hxuC [H]
Synonym: Sbal195_1054
Alternate gene names: 160874174
Gene position: 1248413-1250503 (Clockwise)
Preceding gene: 160874166
Following gene: 160874175
Centisome position: 23.35
GC content: 46.87
Gene sequence:
>2091_bases ATGAAGAAAAAGCCGTTAGTGATCGCCATGGCGATAGCACTGAGCAGTACGGCCCTAAGTTTTACGTTAGCGGCAGAAGA AAATGTGAAGCCAGTTGTTCAAGGCGATGCGGATAAAAAACTCGTTACAACAGAGTTTGATGAAGTGCTAGTAAGCGCAA CCCGCATCAGCGAGAAATCCTCCGAAACCAGCCGCAGCGTAGCCGTGGTGGGTGAAGAGCAACTTGCGGTTGCTCAAGCA TCATCCGTGGCTAATGCCCTTAAAAACGAGGCCAATATTACACTAACGAATGGCCCAAGAGCTTCATCTCAGGGGGTTGA AATCCGTGGTTTAAGTGGCAGTCGAGTACTGCAAACTATTGACGGAGCAAGACAAAATACCGACTCTGGCCACAGAGCAA CTTTCTTTATGGACCCTGAGTTACTGAAATCCATTGAAGTGCTGCGCGGTCCAGCCAGTAGTTTGTGGGGCAGTGGCGCA CTGGGTGGTGTCGTCGCGCAAAATACTAAGTCGGCACAAGACTTTTTAGCACCAGATGAGACCTTTGGTGGCTATTTCAA ACAAGGTTATGAAACCAATGGCTCGCGCACTAAAACCAGTGGCGCGATTTATGGTCAACAAGACAGTATCGATTGGTTAT TGAACGGCTCTTACACCGACTCTAACAATATCAAAACCGGTAATGACGAAACCCTCAGCAACAGTGCATCTCATGGCAGC AGTGGTTTAGCTAAATTTGGTTGGCAAGCTGATGAAGCATCACGCTTAGAGTTATCTGCTAGAGTTAATAAGATCAATGA ATTAGTGCCAAGTAATCCTTCTGCGGCAGCCAGTAATTCAGTGCCTTTGGTGCGTCGCAAGACAGACGATCAAAATATCA CCTTAGATTACAGTTTTAATCCTGCCAATAACCCGTATCTGGATACTAAGATGCAAGTGTATTGGAACAGTACCGACTAC GATGAAGACCGCATCACTAAGGGCCAGCTAGACAGCACTGAGTACCGCACTGTGGGGATTAACCTTAATAACAGTTCGCG CTTGGGCAATACTTTATTGACCTACGGCGTTGATGGTTTTCGCGATACCATAGAAACAACCCGTGATGATTCGGGTCAAG TGGGCCAGCGTCCGGGAAATATTGATGGTGAAACCACAGTATGGGGCGCTTTTACGCGGGCAGATATTGAGCTGACTAAG ACGTTAAATCTGGATGCAGGTCTGCGTTATGACAGCTTTAAAAATGACAGTAATAACCTCAATTTATCCTCAGATGACAA TGAGTTATCGCCATCGCTAGGGCTAGTTTGGCAGACTCAATCTTGGTTGACCTTAAGTGCCCGTTACGATCAAGCCTTCC GCGCACCTTCGGTTGAGGAAATGTATTCTAGCGGCACCCATTACTGCATTCCACCTATTCCGGGATTCTTGCCCCAAGGT CTATGCAACACCTTTGCGACCAATCCAGATCTAAAGTCTGAAAAAGCCCGTAACAAAGAAATCAAAGCAGACTTACGTTT CAGTGAGTTAGCCGGTGATGATGAATTAGCATTGACGTTCAACATCTTCCGTAACGATGTGGACGATTTCATCGTGCAGC AAGTGTCTAATCCTTGGCATGGTATTCCTGGATTTGAGCAAACGACCTCATGGAATAACGTTGAAGATGCACGTTTAACA GGTTTTGAAATAAGCGGTCGTTATCGTATTGGCCAAACTCGTTTAGCGATGAATTACGGCCAAACCCATGGTGAAGATCG TCAAACGGGCGGCGATATTGAAGGTATACCCGCCAATAAATTCAACGTCGATTTATCCCAAGGCATTATGGAAGGCGACA TGAAACTCGGCACTCGCGTTACCTATGTAGCGACGCAGTCGAATACACCTGACGGTTATAGAGTGGCGAAATACGACGAT TACACCCTATGGGATGTGTATGTTGCATGGGAGCCGACTATGGGCGCCATGGCGGGTGTGAGAGTGGATTTCGCCATCGA AAACATCGGCGACGAGAAATACCTACAAGCGTGGCAAACCTTGTATCAACCGGGCCGTAATATGAAGTTATCGGCGCGAT ATATGTTCTAA
Upstream 100 bases:
>100_bases ATAACAGACTCAATCTTAAAAGGATTGGCGTCTGGAAAGAGAGTCTGGGGTCAGTATTGAATTGCACGGATATAGCTGAT TATCACTTGAGGATGAAGAG
Downstream 100 bases:
>100_bases GCCCTGCATTAAAGTGCTGACTTCCGTTTCGGCAAATGCTGAGTGTTAAATCTGAGCAAGCGGTAAACGGGAGCCAGCGT TTAATGCCAAGCCACTCAAT
Product: TonB-dependent heme/hemoglobin receptor family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 696; Mature: 696
Protein sequence:
>696_residues MKKKPLVIAMAIALSSTALSFTLAAEENVKPVVQGDADKKLVTTEFDEVLVSATRISEKSSETSRSVAVVGEEQLAVAQA SSVANALKNEANITLTNGPRASSQGVEIRGLSGSRVLQTIDGARQNTDSGHRATFFMDPELLKSIEVLRGPASSLWGSGA LGGVVAQNTKSAQDFLAPDETFGGYFKQGYETNGSRTKTSGAIYGQQDSIDWLLNGSYTDSNNIKTGNDETLSNSASHGS SGLAKFGWQADEASRLELSARVNKINELVPSNPSAAASNSVPLVRRKTDDQNITLDYSFNPANNPYLDTKMQVYWNSTDY DEDRITKGQLDSTEYRTVGINLNNSSRLGNTLLTYGVDGFRDTIETTRDDSGQVGQRPGNIDGETTVWGAFTRADIELTK TLNLDAGLRYDSFKNDSNNLNLSSDDNELSPSLGLVWQTQSWLTLSARYDQAFRAPSVEEMYSSGTHYCIPPIPGFLPQG LCNTFATNPDLKSEKARNKEIKADLRFSELAGDDELALTFNIFRNDVDDFIVQQVSNPWHGIPGFEQTTSWNNVEDARLT GFEISGRYRIGQTRLAMNYGQTHGEDRQTGGDIEGIPANKFNVDLSQGIMEGDMKLGTRVTYVATQSNTPDGYRVAKYDD YTLWDVYVAWEPTMGAMAGVRVDFAIENIGDEKYLQAWQTLYQPGRNMKLSARYMF
Sequences:
>Translated_696_residues MKKKPLVIAMAIALSSTALSFTLAAEENVKPVVQGDADKKLVTTEFDEVLVSATRISEKSSETSRSVAVVGEEQLAVAQA SSVANALKNEANITLTNGPRASSQGVEIRGLSGSRVLQTIDGARQNTDSGHRATFFMDPELLKSIEVLRGPASSLWGSGA LGGVVAQNTKSAQDFLAPDETFGGYFKQGYETNGSRTKTSGAIYGQQDSIDWLLNGSYTDSNNIKTGNDETLSNSASHGS SGLAKFGWQADEASRLELSARVNKINELVPSNPSAAASNSVPLVRRKTDDQNITLDYSFNPANNPYLDTKMQVYWNSTDY DEDRITKGQLDSTEYRTVGINLNNSSRLGNTLLTYGVDGFRDTIETTRDDSGQVGQRPGNIDGETTVWGAFTRADIELTK TLNLDAGLRYDSFKNDSNNLNLSSDDNELSPSLGLVWQTQSWLTLSARYDQAFRAPSVEEMYSSGTHYCIPPIPGFLPQG LCNTFATNPDLKSEKARNKEIKADLRFSELAGDDELALTFNIFRNDVDDFIVQQVSNPWHGIPGFEQTTSWNNVEDARLT GFEISGRYRIGQTRLAMNYGQTHGEDRQTGGDIEGIPANKFNVDLSQGIMEGDMKLGTRVTYVATQSNTPDGYRVAKYDD YTLWDVYVAWEPTMGAMAGVRVDFAIENIGDEKYLQAWQTLYQPGRNMKLSARYMF >Mature_696_residues MKKKPLVIAMAIALSSTALSFTLAAEENVKPVVQGDADKKLVTTEFDEVLVSATRISEKSSETSRSVAVVGEEQLAVAQA SSVANALKNEANITLTNGPRASSQGVEIRGLSGSRVLQTIDGARQNTDSGHRATFFMDPELLKSIEVLRGPASSLWGSGA LGGVVAQNTKSAQDFLAPDETFGGYFKQGYETNGSRTKTSGAIYGQQDSIDWLLNGSYTDSNNIKTGNDETLSNSASHGS SGLAKFGWQADEASRLELSARVNKINELVPSNPSAAASNSVPLVRRKTDDQNITLDYSFNPANNPYLDTKMQVYWNSTDY DEDRITKGQLDSTEYRTVGINLNNSSRLGNTLLTYGVDGFRDTIETTRDDSGQVGQRPGNIDGETTVWGAFTRADIELTK TLNLDAGLRYDSFKNDSNNLNLSSDDNELSPSLGLVWQTQSWLTLSARYDQAFRAPSVEEMYSSGTHYCIPPIPGFLPQG LCNTFATNPDLKSEKARNKEIKADLRFSELAGDDELALTFNIFRNDVDDFIVQQVSNPWHGIPGFEQTTSWNNVEDARLT GFEISGRYRIGQTRLAMNYGQTHGEDRQTGGDIEGIPANKFNVDLSQGIMEGDMKLGTRVTYVATQSNTPDGYRVAKYDD YTLWDVYVAWEPTMGAMAGVRVDFAIENIGDEKYLQAWQTLYQPGRNMKLSARYMF
Specific function: Required for utilization of free heme at low concentrations [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=160, Percent_Identity=31.25, Blast_Score=66, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR011276 - InterPro: IPR010949 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 76405; Mature: 76405
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKPLVIAMAIALSSTALSFTLAAEENVKPVVQGDADKKLVTTEFDEVLVSATRISEKS CCCCCEEEEEEEHHCCCEEEEEEECCCCCCCEEECCCCCEEEEECHHHHHHHHHHHCCCC SETSRSVAVVGEEQLAVAQASSVANALKNEANITLTNGPRASSQGVEIRGLSGSRVLQTI CCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCCCHHHHHH DGARQNTDSGHRATFFMDPELLKSIEVLRGPASSLWGSGALGGVVAQNTKSAQDFLAPDE HCCCCCCCCCCEEEEEECHHHHHHHHHHCCCHHHHCCCCCCCCEEECCCCCHHHHCCCCH TFGGYFKQGYETNGSRTKTSGAIYGQQDSIDWLLNGSYTDSNNIKTGNDETLSNSASHGS HHCHHHHCCCCCCCCEEECCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC SGLAKFGWQADEASRLELSARVNKINELVPSNPSAAASNSVPLVRRKTDDQNITLDYSFN CCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEC PANNPYLDTKMQVYWNSTDYDEDRITKGQLDSTEYRTVGINLNNSSRLGNTLLTYGVDGF CCCCCEECCEEEEEECCCCCCHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCCHH RDTIETTRDDSGQVGQRPGNIDGETTVWGAFTRADIELTKTLNLDAGLRYDSFKNDSNNL HHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCC NLSSDDNELSPSLGLVWQTQSWLTLSARYDQAFRAPSVEEMYSSGTHYCIPPIPGFLPQG CCCCCCCCCCCCEEEEEECCCEEEEEECHHHHHCCCCHHHHHCCCCCEECCCCCCCCHHH LCNTFATNPDLKSEKARNKEIKADLRFSELAGDDELALTFNIFRNDVDDFIVQQVSNPWH HHHHHCCCCCCCCHHHCCCCEEECCCHHHHCCCCCEEEEEEHHHCCHHHHHHHHHCCCCC GIPGFEQTTSWNNVEDARLTGFEISGRYRIGQTRLAMNYGQTHGEDRQTGGDIEGIPANK CCCCCCCCCCCCCCCCCEEEEEEECCEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCC FNVDLSQGIMEGDMKLGTRVTYVATQSNTPDGYRVAKYDDYTLWDVYVAWEPTMGAMAGV EECCHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEECCEEEEEEEEEECCCCCCHHCE RVDFAIENIGDEKYLQAWQTLYQPGRNMKLSARYMF EEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECC >Mature Secondary Structure MKKKPLVIAMAIALSSTALSFTLAAEENVKPVVQGDADKKLVTTEFDEVLVSATRISEKS CCCCCEEEEEEEHHCCCEEEEEEECCCCCCCEEECCCCCEEEEECHHHHHHHHHHHCCCC SETSRSVAVVGEEQLAVAQASSVANALKNEANITLTNGPRASSQGVEIRGLSGSRVLQTI CCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCCCHHHHHH DGARQNTDSGHRATFFMDPELLKSIEVLRGPASSLWGSGALGGVVAQNTKSAQDFLAPDE HCCCCCCCCCCEEEEEECHHHHHHHHHHCCCHHHHCCCCCCCCEEECCCCCHHHHCCCCH TFGGYFKQGYETNGSRTKTSGAIYGQQDSIDWLLNGSYTDSNNIKTGNDETLSNSASHGS HHCHHHHCCCCCCCCEEECCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC SGLAKFGWQADEASRLELSARVNKINELVPSNPSAAASNSVPLVRRKTDDQNITLDYSFN CCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEC PANNPYLDTKMQVYWNSTDYDEDRITKGQLDSTEYRTVGINLNNSSRLGNTLLTYGVDGF CCCCCEECCEEEEEECCCCCCHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCCHH RDTIETTRDDSGQVGQRPGNIDGETTVWGAFTRADIELTKTLNLDAGLRYDSFKNDSNNL HHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCC NLSSDDNELSPSLGLVWQTQSWLTLSARYDQAFRAPSVEEMYSSGTHYCIPPIPGFLPQG CCCCCCCCCCCCEEEEEECCCEEEEEECHHHHHCCCCHHHHHCCCCCEECCCCCCCCHHH LCNTFATNPDLKSEKARNKEIKADLRFSELAGDDELALTFNIFRNDVDDFIVQQVSNPWH HHHHHCCCCCCCCHHHCCCCEEECCCHHHHCCCCCEEEEEEHHHCCHHHHHHHHHCCCCC GIPGFEQTTSWNNVEDARLTGFEISGRYRIGQTRLAMNYGQTHGEDRQTGGDIEGIPANK CCCCCCCCCCCCCCCCCEEEEEEECCEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCC FNVDLSQGIMEGDMKLGTRVTYVATQSNTPDGYRVAKYDDYTLWDVYVAWEPTMGAMAGV EECCHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEECCEEEEEEEEEECCCCCCHHCE RVDFAIENIGDEKYLQAWQTLYQPGRNMKLSARYMF EEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7751272 [H]