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The map label for this gene is yciR [C]

Identifier: 160873825

GI number: 160873825

Start: 854990

End: 856930

Strand: Reverse

Name: yciR [C]

Synonym: Sbal195_0703

Alternate gene names: 160873825

Gene position: 856930-854990 (Counterclockwise)

Preceding gene: 160873827

Following gene: 160873816

Centisome position: 16.03

GC content: 45.08

Gene sequence:

>1941_bases
ATGCCATACAATTTCGCCATTAATCAGTCTCAAAAAGATCGTTTATTCGCCGACATTGCTATCGACACAGACAAAATCGT
TGTTCCCCAAGTAATGGTTGATAACTGGCAACAAACCTTAGATTTGCTCTCTGAATTGGTCGACACTCCCGCGGCTTTAA
TCATGCGTGTCCATCAAACCGATATAGAAGTTTTTACCTCGAGCCGCACTCAAGGGAATCCCTATAAAAAACACGACAAA
GACAGTTTAGGCCACGGACTTTACTGCGAGACAGTGATAAAAGGAGGCAAGGAACTCCACATTCCGAATGCCCTAAAAGA
TAAAGACTGGGATAAAAATCCGGATATAAAACTCGGCATGATTGCATACTGTGGCTTACCTTTACGCTGGCCCGATAACA
GCGCCTTTGGCACTATCTGCATGCTCGATAACAAAGAGCATAATTACAGCCAATCGTTTCGCAGCTTACTCGCTCGTTTT
CAAAATGGTATAGAAGCCAACCTCGTCACCCTCTATCAACAGGCAAAGCTGCAACTGCACAACCAAGAGTTAGAGCAAAA
AGTGCAACAACGCACCCATGAACTCGCCGAACTCAGTAGCAAACTCATCAAAGAAATCGAAAATCGAACCTCCACCGAAA
CCTCATTGGAATACCACAAAAGCTATGATCCACTGACGGGATTACCGAATCGCATCAATTTGATTAATAGCCTTTCGACC
ATGCTCGAAGAAGTGAATCGCAAGGAAAAGATTTCAGTACTCTATCTGGGGCTGCGTAATTTCAAGTCCATCAACGACAG
TTATGGCTACCTGATTGGCGATAAAATTCTCACCATTCTCAGCCAACGTTTACAACACTATGCCGATGAAAATACCTTCA
TCGCCCGTATTGCCGGCGCCGAGTTTGTGATTATTCAAGCCCATAAACCTTCGAACAACGAAACCAACAAACTCATCAAT
AAAGTGCTTAGCTGCTGCAATACCCCCTTTGGCGTGGCGGATTTTGTGATCACCATTCCATCGAGCATGGGTATAGCTCA
AGCGCCCATCGATGGCATAGATGCCGCCATTCTGCTGCAAAAAGCAGGGGCTGCGATGACGATCAGCAAAGCCGATGGCT
CAACTCACAGCTTCTTTAATCAAGATACTCAAGCGGCTTTGAATCTACGCTATCAACTGGAATCTCACTTAGTCGATGCA
TTGAACAAAAACGAGTTAAGCCTTCATTACCAACCCTTTATTAACTTAAGGACTCAAAAGGTGATAGGCGCCGAAGCCCT
GCTGCGCTGGCACAATCCGATCCTTGGCAATGTCGCCCCAGACAGATTTATCGCCTTAGCAGAACGTAATGGCCAGATTA
TAGATATTGGCAATTTTGTATTGCATACCGCCCTAGCTCAGGCGGCAAAATGGTGTCGTGAGCTAGATCAGGAGTTTAAA
ATCGCCATCAATATCTCCCCTTTGCAAATGCGCAATCCCCGTTTTAGCGAGCACATAGCTGACTTACTCACCCTCTATCA
ATTGCCACCGACCGCCCTAGAGCTTGAAATCACCGAAGGCATGTTGATGCAGGACGAGCACATTGCCCACAATGCCATCC
AAAAGCTGCAGGAACTCGGGATCCGCATCTCCTTAGATGACTTTGGTACTGGCTATTCATCCCTAAGTTATCTACAAAAA
TACTCTTTCGATACTTTAAAAATCGATCGCTGTTTTATCAATAAACTCGAAGAAAACGAACAAGATAGGGAGCTCACTAA
AGCGATTATTGCCATAGGCAAGAAACTGAACTTAGTCGTGATCGCCGAAGGCGTGGAAACCCTAGAACAAGATGCCTTTA
TTCGTCACGAGGAATGCGACTTAGGTCAAGGCTACCTCTACGGTAAACCCATCACCGCAACACAGTTTGAGCAGGCATTT
ATCCATAAAAAAGAGCATTAA

Upstream 100 bases:

>100_bases
ATTTACATCGCAATGCAACTAAATTTATTCAAAAAACTCACAACATGAGTAAAAAGACTATAGTTTATAAATAATATCGC
GCCTCTAGGACTGAGCATTC

Downstream 100 bases:

>100_bases
TTTCATCCTTAATGCTCTTTTTAATCTTACAAATTAAATTCTGTAGAACTATGCAGAACAAAGAAATCGAACCACATAGT
TAGCACTCAACATCACCTCA

Product: GAF sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 646; Mature: 645

Protein sequence:

>646_residues
MPYNFAINQSQKDRLFADIAIDTDKIVVPQVMVDNWQQTLDLLSELVDTPAALIMRVHQTDIEVFTSSRTQGNPYKKHDK
DSLGHGLYCETVIKGGKELHIPNALKDKDWDKNPDIKLGMIAYCGLPLRWPDNSAFGTICMLDNKEHNYSQSFRSLLARF
QNGIEANLVTLYQQAKLQLHNQELEQKVQQRTHELAELSSKLIKEIENRTSTETSLEYHKSYDPLTGLPNRINLINSLST
MLEEVNRKEKISVLYLGLRNFKSINDSYGYLIGDKILTILSQRLQHYADENTFIARIAGAEFVIIQAHKPSNNETNKLIN
KVLSCCNTPFGVADFVITIPSSMGIAQAPIDGIDAAILLQKAGAAMTISKADGSTHSFFNQDTQAALNLRYQLESHLVDA
LNKNELSLHYQPFINLRTQKVIGAEALLRWHNPILGNVAPDRFIALAERNGQIIDIGNFVLHTALAQAAKWCRELDQEFK
IAINISPLQMRNPRFSEHIADLLTLYQLPPTALELEITEGMLMQDEHIAHNAIQKLQELGIRISLDDFGTGYSSLSYLQK
YSFDTLKIDRCFINKLEENEQDRELTKAIIAIGKKLNLVVIAEGVETLEQDAFIRHEECDLGQGYLYGKPITATQFEQAF
IHKKEH

Sequences:

>Translated_646_residues
MPYNFAINQSQKDRLFADIAIDTDKIVVPQVMVDNWQQTLDLLSELVDTPAALIMRVHQTDIEVFTSSRTQGNPYKKHDK
DSLGHGLYCETVIKGGKELHIPNALKDKDWDKNPDIKLGMIAYCGLPLRWPDNSAFGTICMLDNKEHNYSQSFRSLLARF
QNGIEANLVTLYQQAKLQLHNQELEQKVQQRTHELAELSSKLIKEIENRTSTETSLEYHKSYDPLTGLPNRINLINSLST
MLEEVNRKEKISVLYLGLRNFKSINDSYGYLIGDKILTILSQRLQHYADENTFIARIAGAEFVIIQAHKPSNNETNKLIN
KVLSCCNTPFGVADFVITIPSSMGIAQAPIDGIDAAILLQKAGAAMTISKADGSTHSFFNQDTQAALNLRYQLESHLVDA
LNKNELSLHYQPFINLRTQKVIGAEALLRWHNPILGNVAPDRFIALAERNGQIIDIGNFVLHTALAQAAKWCRELDQEFK
IAINISPLQMRNPRFSEHIADLLTLYQLPPTALELEITEGMLMQDEHIAHNAIQKLQELGIRISLDDFGTGYSSLSYLQK
YSFDTLKIDRCFINKLEENEQDRELTKAIIAIGKKLNLVVIAEGVETLEQDAFIRHEECDLGQGYLYGKPITATQFEQAF
IHKKEH
>Mature_645_residues
PYNFAINQSQKDRLFADIAIDTDKIVVPQVMVDNWQQTLDLLSELVDTPAALIMRVHQTDIEVFTSSRTQGNPYKKHDKD
SLGHGLYCETVIKGGKELHIPNALKDKDWDKNPDIKLGMIAYCGLPLRWPDNSAFGTICMLDNKEHNYSQSFRSLLARFQ
NGIEANLVTLYQQAKLQLHNQELEQKVQQRTHELAELSSKLIKEIENRTSTETSLEYHKSYDPLTGLPNRINLINSLSTM
LEEVNRKEKISVLYLGLRNFKSINDSYGYLIGDKILTILSQRLQHYADENTFIARIAGAEFVIIQAHKPSNNETNKLINK
VLSCCNTPFGVADFVITIPSSMGIAQAPIDGIDAAILLQKAGAAMTISKADGSTHSFFNQDTQAALNLRYQLESHLVDAL
NKNELSLHYQPFINLRTQKVIGAEALLRWHNPILGNVAPDRFIALAERNGQIIDIGNFVLHTALAQAAKWCRELDQEFKI
AINISPLQMRNPRFSEHIADLLTLYQLPPTALELEITEGMLMQDEHIAHNAIQKLQELGIRISLDDFGTGYSSLSYLQKY
SFDTLKIDRCFINKLEENEQDRELTKAIIAIGKKLNLVVIAEGVETLEQDAFIRHEECDLGQGYLYGKPITATQFEQAFI
HKKEH

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=422, Percent_Identity=32.9383886255924, Blast_Score=245, Evalue=6e-66,
Organism=Escherichia coli, GI87081921, Length=545, Percent_Identity=31.0091743119266, Blast_Score=229, Evalue=4e-61,
Organism=Escherichia coli, GI226510982, Length=427, Percent_Identity=27.8688524590164, Blast_Score=167, Evalue=2e-42,
Organism=Escherichia coli, GI87081743, Length=248, Percent_Identity=35.4838709677419, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1788502, Length=250, Percent_Identity=31.6, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI87081980, Length=243, Percent_Identity=35.3909465020576, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI87081845, Length=294, Percent_Identity=29.5918367346939, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1787055, Length=243, Percent_Identity=32.5102880658436, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=32.2175732217573, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1786507, Length=244, Percent_Identity=30.327868852459, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1788849, Length=274, Percent_Identity=31.021897810219, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87082096, Length=427, Percent_Identity=24.5901639344262, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI87081977, Length=252, Percent_Identity=26.984126984127, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788956, Length=109, Percent_Identity=29.3577981651376, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787410, Length=224, Percent_Identity=24.1071428571429, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR000253
- InterPro:   IPR000014
- InterPro:   IPR008984 [H]

Pfam domain/function: PF00563 EAL; PF00498 FHA; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 73114; Mature: 72983

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYNFAINQSQKDRLFADIAIDTDKIVVPQVMVDNWQQTLDLLSELVDTPAALIMRVHQT
CCCCCCCCCCCCCCEEEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
DIEVFTSSRTQGNPYKKHDKDSLGHGLYCETVIKGGKELHIPNALKDKDWDKNPDIKLGM
CHHEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEE
IAYCGLPLRWPDNSAFGTICMLDNKEHNYSQSFRSLLARFQNGIEANLVTLYQQAKLQLH
HEECCCCEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
NQELEQKVQQRTHELAELSSKLIKEIENRTSTETSLEYHKSYDPLTGLPNRINLINSLST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
MLEEVNRKEKISVLYLGLRNFKSINDSYGYLIGDKILTILSQRLQHYADENTFIARIAGA
HHHHHCCHHEEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
EFVIIQAHKPSNNETNKLINKVLSCCNTPFGVADFVITIPSSMGIAQAPIDGIDAAILLQ
EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCCCCHHHHHH
KAGAAMTISKADGSTHSFFNQDTQAALNLRYQLESHLVDALNKNELSLHYQPFINLRTQK
HCCCEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
VIGAEALLRWHNPILGNVAPDRFIALAERNGQIIDIGNFVLHTALAQAAKWCRELDQEFK
HHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEE
IAINISPLQMRNPRFSEHIADLLTLYQLPPTALELEITEGMLMQDEHIAHNAIQKLQELG
EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCEECHHHHHHHHHHHHHHCC
IRISLDDFGTGYSSLSYLQKYSFDTLKIDRCFINKLEENEQDRELTKAIIAIGKKLNLVV
CEEEECCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEE
IAEGVETLEQDAFIRHEECDLGQGYLYGKPITATQFEQAFIHKKEH
EECCHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
PYNFAINQSQKDRLFADIAIDTDKIVVPQVMVDNWQQTLDLLSELVDTPAALIMRVHQT
CCCCCCCCCCCCCEEEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
DIEVFTSSRTQGNPYKKHDKDSLGHGLYCETVIKGGKELHIPNALKDKDWDKNPDIKLGM
CHHEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEE
IAYCGLPLRWPDNSAFGTICMLDNKEHNYSQSFRSLLARFQNGIEANLVTLYQQAKLQLH
HEECCCCEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
NQELEQKVQQRTHELAELSSKLIKEIENRTSTETSLEYHKSYDPLTGLPNRINLINSLST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
MLEEVNRKEKISVLYLGLRNFKSINDSYGYLIGDKILTILSQRLQHYADENTFIARIAGA
HHHHHCCHHEEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
EFVIIQAHKPSNNETNKLINKVLSCCNTPFGVADFVITIPSSMGIAQAPIDGIDAAILLQ
EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCCCCHHHHHH
KAGAAMTISKADGSTHSFFNQDTQAALNLRYQLESHLVDALNKNELSLHYQPFINLRTQK
HCCCEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
VIGAEALLRWHNPILGNVAPDRFIALAERNGQIIDIGNFVLHTALAQAAKWCRELDQEFK
HHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEE
IAINISPLQMRNPRFSEHIADLLTLYQLPPTALELEITEGMLMQDEHIAHNAIQKLQELG
EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCEECHHHHHHHHHHHHHHCC
IRISLDDFGTGYSSLSYLQKYSFDTLKIDRCFINKLEENEQDRELTKAIIAIGKKLNLVV
CEEEECCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEE
IAEGVETLEQDAFIRHEECDLGQGYLYGKPITATQFEQAFIHKKEH
EECCHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]