| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is 160873656
Identifier: 160873656
GI number: 160873656
Start: 617040
End: 619181
Strand: Reverse
Name: 160873656
Synonym: Sbal195_0534
Alternate gene names: NA
Gene position: 619181-617040 (Counterclockwise)
Preceding gene: 160873657
Following gene: 160873654
Centisome position: 11.58
GC content: 49.95
Gene sequence:
>2142_bases ATGGAAGACAATAAGATGGCTGCAAATTCTGCGTATTTATCTCACCCGTTTAAAACTTCAGTAATTTCCTCATCCCTCGC AATCGCCATGGGCTTATCGTTAGCACCGCAGGCAATGGCCGATGACAGCGAGTTAGCCAATATTGAACGCTTAGAAGTCC ACGGCCAACAGACCGAAAACCGCAACACGCTAGGTTCGGCTGAAAACCTGCTGAAAGGACAAGGAGTAGATTTCTCCGAA GCGGGTGGCGTATCAGCTCTGCCTATTCTCAATGGCATGATGGGCGATCGCATCAAAGTGTTAGTTGATGGTGCGGACAT TACCGCTTCCTGCGCCAACCAAATGAATCCACCGCTGTCCTATATTTCCGCCAATCAAGTCACCACAGCCGAAGTGATTG CGGGTGTATCGCCAGTCAGCGCGGGCGGCGACAATATCGCGGGGGTGATCAAAGTCAGCAGCCTTAATCCTAAATTTGGC GAAAGCGATAGCATCAAGTGGAATAGCGGCGATATCTCAACGGGATACCGCAGCGTGAGTGATACCTTGCTACTGGGCAC CAATGCCACAGTTGCCAGCAACAATATCAGCCTAAGCTATCAAGGCGCCTATGAAGATGCCAACAGCTATAAAGATGGCA ATGGCGATAAAGTCATCGATACCCTGTACCGCGCACAAAACCACGCATTGACCGCCGCATGGCGCGATGAGACTCAACAA GTCGCCATCAAACTGACCCATCAGAATATTCCATTTCAAGGTTTTGCTAACCAATACATGGATATGACAGATAACAAGAG TTACGGTGCCCTCGCCCGTTATCAACTTAAACTCGACGATGACGGTGAGTTCAGTGCCCAATTCAATTGGCACGGCGTGA AGCACGAGATGGGCTTTTTTACCCCAGAAAAAACCGGCAAGATGCCGATGAACACTGAAGGTGATGACTACAGCTATCAA CTGCACTGGCGCTTGCCAATGGGTGATGACAGCACCTTACTGGTCGGCCAAGAATTCTATAGCTACCAGCTCGACGATGT GTGGCCTGCGGTGCCAGGCACTATGATGGCGCCGAATGATTACATCAACATCAACGATGGCGAACGTCGCCGCGCCGCCG TTTATGGCGAATGGCAGCAAGATTTGAGCTCTAGCTGGTGGTTATCGGCGGGTGTTCGCTTTGAGTATGTCACCACCAAT ACTGGTGAAGTCCAAGCCTATAGCAACATGCCAATGATGGGCATGCCGAATATGGATGCCGCTGCGGCGCAGGCCTTTAA TGCGATGGACAGAGAGCGTAATGATGATCTGATCGACGCCACTTTACTGGCTCGCTATCAATTATCGGCCAATCAACAAC TTGAGTTTGGCCTTGCCCGCAAGAATCGTGCCCCCAATCTATACGAACGTTACAGCTGGGGCCGCGGCACTATGGCAACC ACTATGATAGGTTGGTATGGCGATGGTAATGGTTATGTGGGTAATCCAGATCTAAAGCCAGAAACTGCCCACACCCTGAG CGCAGCCTACAAATATAACGGTGATAGCTGGCAAGTCTCGACCACAGCTTGGTACACAGCGGTGACTGACTATATCGATG CCGAAGTGATTGGTAGCTTCAATCGCACTAGCTCAGCTGATGGCAAACGCAATATTCTTCAATTCACTAACTTAGATGCC AATCTCTATGGCGCACGCTTTAATGCGCTCTATCAGTTTGCTGAAACCAGCACAGGTAAATGGCAAGTGTTAGGCAAAGT AAATTTGACCCGTGGTGAGCGAGATGAAGGCAATGAGCCTTTATATCAAATCAAGCCGCTGCAAACCGAGCTGGCACTGC AACATCAACTCGGTAACTGGGAAAACAGTCTTTCATGGCAATGGGTTGCGACCAAAGATCGCGTGGATGACCGCCGCCTT GAAAATGAAACCGATAGCTACTCCTTACTTAACTTAAACAGCAGCATGAAATGGCAGGATCTGACTGTCACCTTCGCCGT GAATAACCTATTAGACAGCTATTATGAGCTGCCGCTGGGCGGTGTGAGTGTGGCGGAATTTAAGGCCGATAACACCAATG GCTTTAACCAGATTGCCGGTGCAGGCCGCTCGTTCGAACTCAGCGCAAGCTATGCGTTTTAA
Upstream 100 bases:
>100_bases TCAATTCTGTTTTTAACCCGCTTTGTTGCCCTCTGCGACAATATGCCGCACCTGTCACTCTTAGATGCTCTTTATAATGC AGCGCAATTAATCCAAGTGA
Downstream 100 bases:
>100_bases AGACATGGATTTGTGATGATTCCGCTTATTAGGGCGAATAGCCCTAATAAGCGCGTTAAACAAAAAGGGCAAGCAGATTA AGTGATTAATCGCTTGCCCT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NB-Dependent Copper Receptor; NB Dependent Receptor; NB-Dependent Receptor Protein; Outer Membrane Receptor Protein; Outer Membrane Protein C; NB-Dependent Receptor Domain Protein; Outer Membrane Protein; NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Outer Membrane Insertion C-Terminal Signal; IMP Dehydrogenase/GMP Reductase; Outer Membrane Protein NosA; NB-Dependent Copper Receptor Protein; Outer Membrane Copper Receptor; Iron Complex Outermembrane Recepter Protein; Nb-Dependent Receptor; NB-Dependent Receptor Domain-Containing Protein
Number of amino acids: Translated: 713; Mature: 713
Protein sequence:
>713_residues MEDNKMAANSAYLSHPFKTSVISSSLAIAMGLSLAPQAMADDSELANIERLEVHGQQTENRNTLGSAENLLKGQGVDFSE AGGVSALPILNGMMGDRIKVLVDGADITASCANQMNPPLSYISANQVTTAEVIAGVSPVSAGGDNIAGVIKVSSLNPKFG ESDSIKWNSGDISTGYRSVSDTLLLGTNATVASNNISLSYQGAYEDANSYKDGNGDKVIDTLYRAQNHALTAAWRDETQQ VAIKLTHQNIPFQGFANQYMDMTDNKSYGALARYQLKLDDDGEFSAQFNWHGVKHEMGFFTPEKTGKMPMNTEGDDYSYQ LHWRLPMGDDSTLLVGQEFYSYQLDDVWPAVPGTMMAPNDYININDGERRRAAVYGEWQQDLSSSWWLSAGVRFEYVTTN TGEVQAYSNMPMMGMPNMDAAAAQAFNAMDRERNDDLIDATLLARYQLSANQQLEFGLARKNRAPNLYERYSWGRGTMAT TMIGWYGDGNGYVGNPDLKPETAHTLSAAYKYNGDSWQVSTTAWYTAVTDYIDAEVIGSFNRTSSADGKRNILQFTNLDA NLYGARFNALYQFAETSTGKWQVLGKVNLTRGERDEGNEPLYQIKPLQTELALQHQLGNWENSLSWQWVATKDRVDDRRL ENETDSYSLLNLNSSMKWQDLTVTFAVNNLLDSYYELPLGGVSVAEFKADNTNGFNQIAGAGRSFELSASYAF
Sequences:
>Translated_713_residues MEDNKMAANSAYLSHPFKTSVISSSLAIAMGLSLAPQAMADDSELANIERLEVHGQQTENRNTLGSAENLLKGQGVDFSE AGGVSALPILNGMMGDRIKVLVDGADITASCANQMNPPLSYISANQVTTAEVIAGVSPVSAGGDNIAGVIKVSSLNPKFG ESDSIKWNSGDISTGYRSVSDTLLLGTNATVASNNISLSYQGAYEDANSYKDGNGDKVIDTLYRAQNHALTAAWRDETQQ VAIKLTHQNIPFQGFANQYMDMTDNKSYGALARYQLKLDDDGEFSAQFNWHGVKHEMGFFTPEKTGKMPMNTEGDDYSYQ LHWRLPMGDDSTLLVGQEFYSYQLDDVWPAVPGTMMAPNDYININDGERRRAAVYGEWQQDLSSSWWLSAGVRFEYVTTN TGEVQAYSNMPMMGMPNMDAAAAQAFNAMDRERNDDLIDATLLARYQLSANQQLEFGLARKNRAPNLYERYSWGRGTMAT TMIGWYGDGNGYVGNPDLKPETAHTLSAAYKYNGDSWQVSTTAWYTAVTDYIDAEVIGSFNRTSSADGKRNILQFTNLDA NLYGARFNALYQFAETSTGKWQVLGKVNLTRGERDEGNEPLYQIKPLQTELALQHQLGNWENSLSWQWVATKDRVDDRRL ENETDSYSLLNLNSSMKWQDLTVTFAVNNLLDSYYELPLGGVSVAEFKADNTNGFNQIAGAGRSFELSASYAF >Mature_713_residues MEDNKMAANSAYLSHPFKTSVISSSLAIAMGLSLAPQAMADDSELANIERLEVHGQQTENRNTLGSAENLLKGQGVDFSE AGGVSALPILNGMMGDRIKVLVDGADITASCANQMNPPLSYISANQVTTAEVIAGVSPVSAGGDNIAGVIKVSSLNPKFG ESDSIKWNSGDISTGYRSVSDTLLLGTNATVASNNISLSYQGAYEDANSYKDGNGDKVIDTLYRAQNHALTAAWRDETQQ VAIKLTHQNIPFQGFANQYMDMTDNKSYGALARYQLKLDDDGEFSAQFNWHGVKHEMGFFTPEKTGKMPMNTEGDDYSYQ LHWRLPMGDDSTLLVGQEFYSYQLDDVWPAVPGTMMAPNDYININDGERRRAAVYGEWQQDLSSSWWLSAGVRFEYVTTN TGEVQAYSNMPMMGMPNMDAAAAQAFNAMDRERNDDLIDATLLARYQLSANQQLEFGLARKNRAPNLYERYSWGRGTMAT TMIGWYGDGNGYVGNPDLKPETAHTLSAAYKYNGDSWQVSTTAWYTAVTDYIDAEVIGSFNRTSSADGKRNILQFTNLDA NLYGARFNALYQFAETSTGKWQVLGKVNLTRGERDEGNEPLYQIKPLQTELALQHQLGNWENSLSWQWVATKDRVDDRRL ENETDSYSLLNLNSSMKWQDLTVTFAVNNLLDSYYELPLGGVSVAEFKADNTNGFNQIAGAGRSFELSASYAF
Specific function: Unknown
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 78730; Mature: 78730
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEDNKMAANSAYLSHPFKTSVISSSLAIAMGLSLAPQAMADDSELANIERLEVHGQQTEN CCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCCCHHHCCEEEEEECCCCCCC RNTLGSAENLLKGQGVDFSEAGGVSALPILNGMMGDRIKVLVDGADITASCANQMNPPLS CCCCCCHHHHHHCCCCCHHHCCCEEEHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCCHH YISANQVTTAEVIAGVSPVSAGGDNIAGVIKVSSLNPKFGESDSIKWNSGDISTGYRSVS EEECCCCCHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCC DTLLLGTNATVASNNISLSYQGAYEDANSYKDGNGDKVIDTLYRAQNHALTAAWRDETQQ CEEEEECCCEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEE VAIKLTHQNIPFQGFANQYMDMTDNKSYGALARYQLKLDDDGEFSAQFNWHGVKHEMGFF EEEEEEECCCCCCHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCHHCCCC TPEKTGKMPMNTEGDDYSYQLHWRLPMGDDSTLLVGQEFYSYQLDDVWPAVPGTMMAPND CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEECHHHEEECCCCCCCCCCCEECCCC YININDGERRRAAVYGEWQQDLSSSWWLSAGVRFEYVTTNTGEVQAYSNMPMMGMPNMDA EEECCCCCCEEEEEECHHHHHCCCCEEEECCCEEEEEECCCCCEEEECCCCCCCCCCCCH AAAQAFNAMDRERNDDLIDATLLARYQLSANQQLEFGLARKNRAPNLYERYSWGRGTMAT HHHHHHHHHHCCCCCCHHHHHHHEEEECCCCCEEEEEHHHCCCCCCHHHHHCCCCCCEEE TMIGWYGDGNGYVGNPDLKPETAHTLSAAYKYNGDSWQVSTTAWYTAVTDYIDAEVIGSF EEEEEEECCCCCCCCCCCCCCHHHHEEEEEEECCCCEEEEEEEEEHHHHHHHCHHHHCCC NRTSSADGKRNILQFTNLDANLYGARFNALYQFAETSTGKWQVLGKVNLTRGERDEGNEP CCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCC LYQIKPLQTELALQHQLGNWENSLSWQWVATKDRVDDRRLENETDSYSLLNLNSSMKWQD EEEEECCHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCCCCEEEEECCCCCCEEE LTVTFAVNNLLDSYYELPLGGVSVAEFKADNTNGFNQIAGAGRSFELSASYAF EEEEEEHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHCCCCCEEEEEECCC >Mature Secondary Structure MEDNKMAANSAYLSHPFKTSVISSSLAIAMGLSLAPQAMADDSELANIERLEVHGQQTEN CCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCCCHHHCCEEEEEECCCCCCC RNTLGSAENLLKGQGVDFSEAGGVSALPILNGMMGDRIKVLVDGADITASCANQMNPPLS CCCCCCHHHHHHCCCCCHHHCCCEEEHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCCHH YISANQVTTAEVIAGVSPVSAGGDNIAGVIKVSSLNPKFGESDSIKWNSGDISTGYRSVS EEECCCCCHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCC DTLLLGTNATVASNNISLSYQGAYEDANSYKDGNGDKVIDTLYRAQNHALTAAWRDETQQ CEEEEECCCEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEE VAIKLTHQNIPFQGFANQYMDMTDNKSYGALARYQLKLDDDGEFSAQFNWHGVKHEMGFF EEEEEEECCCCCCHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCHHCCCC TPEKTGKMPMNTEGDDYSYQLHWRLPMGDDSTLLVGQEFYSYQLDDVWPAVPGTMMAPND CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEECHHHEEECCCCCCCCCCCEECCCC YININDGERRRAAVYGEWQQDLSSSWWLSAGVRFEYVTTNTGEVQAYSNMPMMGMPNMDA EEECCCCCCEEEEEECHHHHHCCCCEEEECCCEEEEEECCCCCEEEECCCCCCCCCCCCH AAAQAFNAMDRERNDDLIDATLLARYQLSANQQLEFGLARKNRAPNLYERYSWGRGTMAT HHHHHHHHHHCCCCCCHHHHHHHEEEECCCCCEEEEEHHHCCCCCCHHHHHCCCCCCEEE TMIGWYGDGNGYVGNPDLKPETAHTLSAAYKYNGDSWQVSTTAWYTAVTDYIDAEVIGSF EEEEEEECCCCCCCCCCCCCCHHHHEEEEEEECCCCEEEEEEEEEHHHHHHHCHHHHCCC NRTSSADGKRNILQFTNLDANLYGARFNALYQFAETSTGKWQVLGKVNLTRGERDEGNEP CCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCC LYQIKPLQTELALQHQLGNWENSLSWQWVATKDRVDDRRLENETDSYSLLNLNSSMKWQD EEEEECCHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCCCCEEEEECCCCCCEEE LTVTFAVNNLLDSYYELPLGGVSVAEFKADNTNGFNQIAGAGRSFELSASYAF EEEEEEHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA