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The map label for this gene is yggB [C]

Identifier: 160873606

GI number: 160873606

Start: 554814

End: 555650

Strand: Reverse

Name: yggB [C]

Synonym: Sbal195_0484

Alternate gene names: 160873606

Gene position: 555650-554814 (Counterclockwise)

Preceding gene: 160873609

Following gene: 160873605

Centisome position: 10.39

GC content: 46.71

Gene sequence:

>837_bases
ATGATAACACCTGGACTCGATCAGGAATTGCAGCAACTACAAGGCGTTTATCAGCTGATCACAGAGTTTCTAGTCACCTA
TAGCTTCCAATTGGTCGGCGCTTTGCTGATCTTTTTACTGGGTTTGTGGGTCGCCAGTAAGGCATCACGTTTAGTCGCGA
AGCAGTTCGAAAAACACAATATCGACATTACCTTAAGCAATTTTGTCAGTAACCTTATCCGCATTCTGATCATCATAATG
GTTGGGATCATCGCCCTCGGCAAAATTGGCATCAGCGTCACCCCTATGGTGGCAGCCATTGGTGCCGCCTCCTTAGGTGC
TGGCTTAGCCTTGCAAGGCATGTTGGCCAACTATGCCGCCGGCGTGACCATTATCGTCACCCGTCCTTTCGTGGTGGGAA
ACACTATCGAAATCAAAGGGGAAAGCGGCGTCGTTAAACGTATCCACTTAGGCATGACCATACTCACCAATGAGGAAGGC
GAACAAATCAGCATTCCCAATAAGCATATCGTCGGTGAGATCCTGCATAATTCCTTTAGCAATAAACTGGTCGAAACCCA
GTTCAATCTCAGTTACAACACAGATCCCGAACGGGCCATTAGTGTGATCACTGAATTATTGAGCAACAATCCCTATGTCT
ATCAAGAGACCATGCCCAATATCGGCATCAATGGTTTTAATGCTATCGGGATTGAAATGGGAGTGCGCTATTGGGTGCCC
ACGCAAAGCTATTTTCAGCATAAATATAAAGTGAACTTAGCCCTCTACAACGCCCTTAAGCAGGCGGGAATAGAGATTGC
CTGCCCCATCAGGGAGATCCATCTGCAAGATAAATAA

Upstream 100 bases:

>100_bases
CGCGATTACATGATACGCTTCACACATGCATGGCGAATAAGTATTTGATGGGATTTCTGCGCTATAATCGCACAGTTAAG
TTTATTACAAGGATATCATA

Downstream 100 bases:

>100_bases
CGCTAATGATCATGGGGTTGACCGGCGTAGTCGGTCAGCCTAGCGCACATTGTAAACTTGCATTCTTGTACGAATTTACG
TTTACTATGCTCCCAAATAT

Product: mechanosensitive ion channel protein MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MITPGLDQELQQLQGVYQLITEFLVTYSFQLVGALLIFLLGLWVASKASRLVAKQFEKHNIDITLSNFVSNLIRILIIIM
VGIIALGKIGISVTPMVAAIGAASLGAGLALQGMLANYAAGVTIIVTRPFVVGNTIEIKGESGVVKRIHLGMTILTNEEG
EQISIPNKHIVGEILHNSFSNKLVETQFNLSYNTDPERAISVITELLSNNPYVYQETMPNIGINGFNAIGIEMGVRYWVP
TQSYFQHKYKVNLALYNALKQAGIEIACPIREIHLQDK

Sequences:

>Translated_278_residues
MITPGLDQELQQLQGVYQLITEFLVTYSFQLVGALLIFLLGLWVASKASRLVAKQFEKHNIDITLSNFVSNLIRILIIIM
VGIIALGKIGISVTPMVAAIGAASLGAGLALQGMLANYAAGVTIIVTRPFVVGNTIEIKGESGVVKRIHLGMTILTNEEG
EQISIPNKHIVGEILHNSFSNKLVETQFNLSYNTDPERAISVITELLSNNPYVYQETMPNIGINGFNAIGIEMGVRYWVP
TQSYFQHKYKVNLALYNALKQAGIEIACPIREIHLQDK
>Mature_278_residues
MITPGLDQELQQLQGVYQLITEFLVTYSFQLVGALLIFLLGLWVASKASRLVAKQFEKHNIDITLSNFVSNLIRILIIIM
VGIIALGKIGISVTPMVAAIGAASLGAGLALQGMLANYAAGVTIIVTRPFVVGNTIEIKGESGVVKRIHLGMTILTNEEG
EQISIPNKHIVGEILHNSFSNKLVETQFNLSYNTDPERAISVITELLSNNPYVYQETMPNIGINGFNAIGIEMGVRYWVP
TQSYFQHKYKVNLALYNALKQAGIEIACPIREIHLQDK

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=258, Percent_Identity=29.8449612403101, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1786670, Length=208, Percent_Identity=27.8846153846154, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787591, Length=240, Percent_Identity=22.9166666666667, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI2367355, Length=105, Percent_Identity=25.7142857142857, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 30552; Mature: 30552

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITPGLDQELQQLQGVYQLITEFLVTYSFQLVGALLIFLLGLWVASKASRLVAKQFEKHN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IDITLSNFVSNLIRILIIIMVGIIALGKIGISVTPMVAAIGAASLGAGLALQGMLANYAA
CCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHC
GVTIIVTRPFVVGNTIEIKGESGVVKRIHLGMTILTNEEGEQISIPNKHIVGEILHNSFS
CEEEEEECCEEECCEEEECCCCCCEEEEEECEEEEECCCCCEEECCCHHHHHHHHHHHHH
NKLVETQFNLSYNTDPERAISVITELLSNNPYVYQETMPNIGINGFNAIGIEMGVRYWVP
CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEHHEECCEEECC
TQSYFQHKYKVNLALYNALKQAGIEIACPIREIHLQDK
CHHHHHHHHHHHHHHHHHHHHCCCEEECCHHEECCCCC
>Mature Secondary Structure
MITPGLDQELQQLQGVYQLITEFLVTYSFQLVGALLIFLLGLWVASKASRLVAKQFEKHN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IDITLSNFVSNLIRILIIIMVGIIALGKIGISVTPMVAAIGAASLGAGLALQGMLANYAA
CCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHC
GVTIIVTRPFVVGNTIEIKGESGVVKRIHLGMTILTNEEGEQISIPNKHIVGEILHNSFS
CEEEEEECCEEECCEEEECCCCCCEEEEEECEEEEECCCCCEEECCCHHHHHHHHHHHHH
NKLVETQFNLSYNTDPERAISVITELLSNNPYVYQETMPNIGINGFNAIGIEMGVRYWVP
CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEHHEECCEEECC
TQSYFQHKYKVNLALYNALKQAGIEIACPIREIHLQDK
CHHHHHHHHHHHHHHHHHHHHCCCEEECCHHEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]