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The map label for this gene is ydcN [H]

Identifier: 160873452

GI number: 160873452

Start: 369306

End: 369881

Strand: Reverse

Name: ydcN [H]

Synonym: Sbal195_0327

Alternate gene names: 160873452

Gene position: 369881-369306 (Counterclockwise)

Preceding gene: 160873454

Following gene: 160873451

Centisome position: 6.92

GC content: 51.22

Gene sequence:

>576_bases
GTGCAGACGATAAACAGCTATCTCGCCACCACGCTTAAAGCACTTCGCAACCAAAAGGGATGGAGTTTAGATAAAGCCGC
CCAAGAGACGGGCGTCAGCAAGGCCATGATAGGACAAATCGAGCGCGGTGAATCTAGCCCAACCATTGCGACGCTGTGGA
AAATTGCCAGTGGATTCAATATCTCGCTTTCGACCTTTCTCGAACCCACGCCCCAGAGCCAAGGCGCTGTATTCCGTAAG
CCCGACGAGTTACGCCAACAACCAGCCACCGACGGCATGCTAGTCGCCTCACTGTTTCCCTTTGAAGACCGTTTCGGTTT
TGAGATGTTTGAACTCACCCTGCTGCCAAACTATGAGCGACTTTCTGAGCCCCATGAAGCCGGCGTCACTGAACATGTCA
TTGTATTAAGCGGTACTATGGAAGTGTTAGTCGATGGACAGTGGCAAACGCTCAAGCAAGGTGAAGCGGTACGATTTGCG
GCCGACAAACCCCATGGCTATCGAAATCTAAACGAGCAAGCCGTGGTATTCCACGACATCATTCATTATCAACGAGGCAG
TGAATCTAGCTTGTAG

Upstream 100 bases:

>100_bases
GTCGCCACCACGTTGTGCGCTATAACGTACGAGATGGACAAGATAGCACCTGTGCGTTATAACGTACAAACTAAATTTTC
ATAAAAATGATGGGGCCATT

Downstream 100 bases:

>100_bases
CAGCTTATCTAACACCAGTAATGCAGAGTGCGGGCTCTTGCACGGCCAAAGACCAAACCCTTCACTATGATAATTTGCAA
CGCTTGCACTCGCCGATTCA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MQTINSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFLEPTPQSQGAVFRK
PDELRQQPATDGMLVASLFPFEDRFGFEMFELTLLPNYERLSEPHEAGVTEHVIVLSGTMEVLVDGQWQTLKQGEAVRFA
ADKPHGYRNLNEQAVVFHDIIHYQRGSESSL

Sequences:

>Translated_191_residues
MQTINSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFLEPTPQSQGAVFRK
PDELRQQPATDGMLVASLFPFEDRFGFEMFELTLLPNYERLSEPHEAGVTEHVIVLSGTMEVLVDGQWQTLKQGEAVRFA
ADKPHGYRNLNEQAVVFHDIIHYQRGSESSL
>Mature_191_residues
MQTINSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFLEPTPQSQGAVFRK
PDELRQQPATDGMLVASLFPFEDRFGFEMFELTLLPNYERLSEPHEAGVTEHVIVLSGTMEVLVDGQWQTLKQGEAVRFA
ADKPHGYRNLNEQAVVFHDIIHYQRGSESSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=185, Percent_Identity=50.2702702702703, Blast_Score=196, Evalue=9e-52,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 21314; Mature: 21314

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTINSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFN
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHCCCC
ISLSTFLEPTPQSQGAVFRKPDELRQQPATDGMLVASLFPFEDRFGFEMFELTLLPNYER
EEEHEEECCCCCCCCCEEECCHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCHHH
LSEPHEAGVTEHVIVLSGTMEVLVDGQWQTLKQGEAVRFAADKPHGYRNLNEQAVVFHDI
HCCCCCCCCCEEEEEEECCEEEEECCCCHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHH
IHYQRGSESSL
HHHCCCCCCCC
>Mature Secondary Structure
MQTINSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFN
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHCCCC
ISLSTFLEPTPQSQGAVFRKPDELRQQPATDGMLVASLFPFEDRFGFEMFELTLLPNYER
EEEHEEECCCCCCCCCEEECCHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCHHH
LSEPHEAGVTEHVIVLSGTMEVLVDGQWQTLKQGEAVRFAADKPHGYRNLNEQAVVFHDI
HCCCCCCCCCEEEEEEECCEEEEECCCCHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHH
IHYQRGSESSL
HHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]