| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159901390
Identifier: 159901390
GI number: 159901390
Start: 6214452
End: 6216152
Strand: Reverse
Name: 159901390
Synonym: Haur_4879
Alternate gene names: NA
Gene position: 6216152-6214452 (Counterclockwise)
Preceding gene: 159901391
Following gene: 159901387
Centisome position: 97.94
GC content: 48.56
Gene sequence:
>1701_bases ATGTGGTTTATCCGAAGAGTGTGTTTCGTGTTGGTCTTTTTAGGTCTGGTTGCCAGTGCGTGGCTTAAGCCGGCACCAAT TGCTGCCCAAGCCCCATTGACAGGGGATCAAACAGCCCCCTTGTTGAACCCAGTGAGCGAGGGCACTCAACAAGATTTCG AGGCTGGCCTCAATACCGCAAATGGTGCTGTGCTCTATCAAACGGCATCATATCCTGGGGTAAGTTTTCACCGACGTAAT TCAACGGTAGGCTACGCCTACTACGGCGGTGGTTGTACCTATCTTACGGCGCTGAGCAGTGGGAACGAGGATAACAACGC CCTTAGCACCCGCCTCGACATTCCCGACGGTGCGGTCATTCTAGGGGTTGAATTTCAATATCGCGATACCGACGCAGTTA ATAATTCACGCTTATATCTCTATCGTTTTGATGGTGCTGGTGGCGTTGCTACAGTCGCATTATTAAATAGTAGTGGTAAT GGTGGCTATGGCTCAAGCTATACTGCAACCAATCTCAATACCCTCTACGATGCCTTTAGCTATTCCTACTCGTTGGTTTG GTACAGCGGCAGCGTTGGCATCAACCATGCACTTTGTGGTGCACGGGTAAAATATGCTTATAATCCGCCGGTTGCCCGAC CATTCACGATGCCTCCTGCCAACCAACCAGATGCCTTACAAGGTGGTAGCAGCGGCTATAGTTTTACTGCCGCTAGCGAT TTTGTAGCCTTTGAAGAGTCTGCTGCCTATAGTTATTCTAGTGCCGGTTGTATGATTCATACTGGTGGAGCCAACCTTGC AGCTGAGGTTGATTTGGCTGATGGCACGCAATTGGCTGGCTATCGGGCATATTATTACAATACTGCCAGCGGCGCAGCGA TGAATGCAAATCTGGTATGGATCGATGGCTCATCAACAAATACCGTTCTAATTGCATCTACCACAGCTAGTAGCGGTTTT GCGAATGAGTATTTTGTGCCACCTTCGGCCCAGATTATTGATGAGTTCAGTAAAGGCTATCTGATGTATATTCGGCCTGG AACGTCAACGACGACCAGAATGTGTGGTATTCGTACATTCTATACGACTCCGGTCCAAGCCAAGCAATTGCCAGTTTATA TCAACCCGGTTAGCTCAGTCATTGCAGATCACGATGCCAGTGGCGTGCTATTAACCGAACAGCAGCCTGAATCAGCCCCG ATCCAGAGCCTAGATCTAGGGACGGTTGAAGAACTAGCAAGCCCGCTGATTACCAATGAATACCAATTTGTCACAGCTCG TTCATTTATGCCACGCGATAATGTCTATCTTGTGAACAGCGCCCCAGCTGGGTGTATTTCGTTTGGCTCTGATGCTGAGG TAGACTATACCTTCCAATTGCCACCAAACAGTGGGCTACGAGGAATTCGCTTCTACTATCGTAATATTGCTGGCAATTTG GGCAATGCGCGTTATTGGGCCTTCGATGGACGTGGCTGGTATAATCCAATTTTCACCTATGCGATTCCAACCTCAACGAA CTATGCTTCGCAGTTGGTAAGCTATACTGGTTCGCACTACGATCTTTCCAATGGCAGTGTGGCCCATTCACTGAATTTCT CGATCCTTAGCCCGAGCAATACGGTTGAGTTTTGTGGTGCTCGGATTTGGTACACCACCGGCCTGCGTTCGCTCTACATT CCAGTTGCTTTCAAAAATTAA
Upstream 100 bases:
>100_bases CTCAAACGCATGTAAATTGGCAAGATTTGTCATATCAAGGTCGTCTTCATGACGTATCGTTAACCTACCGGACTTTTCGT CGTACTCTTGGAGGTAGTGT
Downstream 100 bases:
>100_bases CCCTCATTCCTACAAAATCAAAGGCCGTAGCCAAACGCTACGGCCTTTTGGTTAATGTGAATTTTGGGTTTGGGGTTGTT TGCGGGCCAAATAGAAAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 566; Mature: 566
Protein sequence:
>566_residues MWFIRRVCFVLVFLGLVASAWLKPAPIAAQAPLTGDQTAPLLNPVSEGTQQDFEAGLNTANGAVLYQTASYPGVSFHRRN STVGYAYYGGGCTYLTALSSGNEDNNALSTRLDIPDGAVILGVEFQYRDTDAVNNSRLYLYRFDGAGGVATVALLNSSGN GGYGSSYTATNLNTLYDAFSYSYSLVWYSGSVGINHALCGARVKYAYNPPVARPFTMPPANQPDALQGGSSGYSFTAASD FVAFEESAAYSYSSAGCMIHTGGANLAAEVDLADGTQLAGYRAYYYNTASGAAMNANLVWIDGSSTNTVLIASTTASSGF ANEYFVPPSAQIIDEFSKGYLMYIRPGTSTTTRMCGIRTFYTTPVQAKQLPVYINPVSSVIADHDASGVLLTEQQPESAP IQSLDLGTVEELASPLITNEYQFVTARSFMPRDNVYLVNSAPAGCISFGSDAEVDYTFQLPPNSGLRGIRFYYRNIAGNL GNARYWAFDGRGWYNPIFTYAIPTSTNYASQLVSYTGSHYDLSNGSVAHSLNFSILSPSNTVEFCGARIWYTTGLRSLYI PVAFKN
Sequences:
>Translated_566_residues MWFIRRVCFVLVFLGLVASAWLKPAPIAAQAPLTGDQTAPLLNPVSEGTQQDFEAGLNTANGAVLYQTASYPGVSFHRRN STVGYAYYGGGCTYLTALSSGNEDNNALSTRLDIPDGAVILGVEFQYRDTDAVNNSRLYLYRFDGAGGVATVALLNSSGN GGYGSSYTATNLNTLYDAFSYSYSLVWYSGSVGINHALCGARVKYAYNPPVARPFTMPPANQPDALQGGSSGYSFTAASD FVAFEESAAYSYSSAGCMIHTGGANLAAEVDLADGTQLAGYRAYYYNTASGAAMNANLVWIDGSSTNTVLIASTTASSGF ANEYFVPPSAQIIDEFSKGYLMYIRPGTSTTTRMCGIRTFYTTPVQAKQLPVYINPVSSVIADHDASGVLLTEQQPESAP IQSLDLGTVEELASPLITNEYQFVTARSFMPRDNVYLVNSAPAGCISFGSDAEVDYTFQLPPNSGLRGIRFYYRNIAGNL GNARYWAFDGRGWYNPIFTYAIPTSTNYASQLVSYTGSHYDLSNGSVAHSLNFSILSPSNTVEFCGARIWYTTGLRSLYI PVAFKN >Mature_566_residues MWFIRRVCFVLVFLGLVASAWLKPAPIAAQAPLTGDQTAPLLNPVSEGTQQDFEAGLNTANGAVLYQTASYPGVSFHRRN STVGYAYYGGGCTYLTALSSGNEDNNALSTRLDIPDGAVILGVEFQYRDTDAVNNSRLYLYRFDGAGGVATVALLNSSGN GGYGSSYTATNLNTLYDAFSYSYSLVWYSGSVGINHALCGARVKYAYNPPVARPFTMPPANQPDALQGGSSGYSFTAASD FVAFEESAAYSYSSAGCMIHTGGANLAAEVDLADGTQLAGYRAYYYNTASGAAMNANLVWIDGSSTNTVLIASTTASSGF ANEYFVPPSAQIIDEFSKGYLMYIRPGTSTTTRMCGIRTFYTTPVQAKQLPVYINPVSSVIADHDASGVLLTEQQPESAP IQSLDLGTVEELASPLITNEYQFVTARSFMPRDNVYLVNSAPAGCISFGSDAEVDYTFQLPPNSGLRGIRFYYRNIAGNL GNARYWAFDGRGWYNPIFTYAIPTSTNYASQLVSYTGSHYDLSNGSVAHSLNFSILSPSNTVEFCGARIWYTTGLRSLYI PVAFKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60897; Mature: 60897
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWFIRRVCFVLVFLGLVASAWLKPAPIAAQAPLTGDQTAPLLNPVSEGTQQDFEAGLNTA CHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCHHCCHHHHHHHCCCCC NGAVLYQTASYPGVSFHRRNSTVGYAYYGGGCTYLTALSSGNEDNNALSTRLDIPDGAVI CCEEEEEECCCCCCEEEECCCEEEEEEECCCEEEEEEECCCCCCCCEEEEEEECCCCEEE LGVEFQYRDTDAVNNSRLYLYRFDGAGGVATVALLNSSGNGGYGSSYTATNLNTLYDAFS EEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCEEECCHHHHHHHHC YSYSLVWYSGSVGINHALCGARVKYAYNPPVARPFTMPPANQPDALQGGSSGYSFTAASD CEEEEEEEECCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC FVAFEESAAYSYSSAGCMIHTGGANLAAEVDLADGTQLAGYRAYYYNTASGAAMNANLVW EEEEECCCCCEECCCCEEEEECCCCEEEEEEECCCCCCCEEEEEEEECCCCCEEECEEEE IDGSSTNTVLIASTTASSGFANEYFVPPSAQIIDEFSKGYLMYIRPGTSTTTRMCGIRTF EECCCCCEEEEEEECCCCCCCCCEECCCCHHHHHHHCCCEEEEEECCCCCCHHEEEEEEE YTTPVQAKQLPVYINPVSSVIADHDASGVLLTEQQPESAPIQSLDLGTVEELASPLITNE EECCCCCCCCCEEECCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCHHCCC YQFVTARSFMPRDNVYLVNSAPAGCISFGSDAEVDYTFQLPPNSGLRGIRFYYRNIAGNL EEEEEEECCCCCCCEEEEECCCCCEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCC GNARYWAFDGRGWYNPIFTYAIPTSTNYASQLVSYTGSHYDLSNGSVAHSLNFSILSPSN CCCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEECCCCCEEEEEEEEEECCCC TVEFCGARIWYTTGLRSLYIPVAFKN CHHHCCCEEEEECCCEEEEEEEEECC >Mature Secondary Structure MWFIRRVCFVLVFLGLVASAWLKPAPIAAQAPLTGDQTAPLLNPVSEGTQQDFEAGLNTA CHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCHHCCHHHHHHHCCCCC NGAVLYQTASYPGVSFHRRNSTVGYAYYGGGCTYLTALSSGNEDNNALSTRLDIPDGAVI CCEEEEEECCCCCCEEEECCCEEEEEEECCCEEEEEEECCCCCCCCEEEEEEECCCCEEE LGVEFQYRDTDAVNNSRLYLYRFDGAGGVATVALLNSSGNGGYGSSYTATNLNTLYDAFS EEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCEEECCHHHHHHHHC YSYSLVWYSGSVGINHALCGARVKYAYNPPVARPFTMPPANQPDALQGGSSGYSFTAASD CEEEEEEEECCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC FVAFEESAAYSYSSAGCMIHTGGANLAAEVDLADGTQLAGYRAYYYNTASGAAMNANLVW EEEEECCCCCEECCCCEEEEECCCCEEEEEEECCCCCCCEEEEEEEECCCCCEEECEEEE IDGSSTNTVLIASTTASSGFANEYFVPPSAQIIDEFSKGYLMYIRPGTSTTTRMCGIRTF EECCCCCEEEEEEECCCCCCCCCEECCCCHHHHHHHCCCEEEEEECCCCCCHHEEEEEEE YTTPVQAKQLPVYINPVSSVIADHDASGVLLTEQQPESAPIQSLDLGTVEELASPLITNE EECCCCCCCCCEEECCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCHHCCC YQFVTARSFMPRDNVYLVNSAPAGCISFGSDAEVDYTFQLPPNSGLRGIRFYYRNIAGNL EEEEEEECCCCCCCEEEEECCCCCEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCC GNARYWAFDGRGWYNPIFTYAIPTSTNYASQLVSYTGSHYDLSNGSVAHSLNFSILSPSN CCCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEECCCCCEEEEEEEEEECCCC TVEFCGARIWYTTGLRSLYIPVAFKN CHHHCCCEEEEECCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA