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The map label for this gene is recJ [H]

Identifier: 159901344

GI number: 159901344

Start: 6162466

End: 6164187

Strand: Direct

Name: recJ [H]

Synonym: Haur_4833

Alternate gene names: 159901344

Gene position: 6162466-6164187 (Clockwise)

Preceding gene: 159901343

Following gene: 159901345

Centisome position: 97.1

GC content: 52.26

Gene sequence:

>1722_bases
ATGCTCAACCAACGTGTTATGCGCCATTGGCAATTGCCAACATCGGCCTCGCCCAGCCAACTTCGCAGCCTCGGCGAGTA
TCATCCATTGCTGGCAGCTATTTTATGGAATCGCGGTTGGCGCGATGCGGCAGCGGTTGAGCAATTTCTCAATATCGATT
GGAAACAACGCCACGATCCTTTTTTGTTGCACGATATGGATCGCGCAGTCGAACGGATTAAGCAGGCAGTTGCCCAACAA
CAACGGGTCGTGGTCTACGGCGATTTCGACACCGACGGCGTGACCGGAGTTACCTTGTTGATGCAATTGTTCAAAGCCTT
TGGTCTGCCAGTGCGCCCCTACATTCCCAAGCGTGAGGGCGAGGGCTACGGCCTGAATCTGGCGGCAATCGAAAAATTGC
ATCAGGAAGGGCTTGATTTGCTCGTGACGGTCGATTGTGGCATTAGCAATGTTGCCGAAATTAGCCGCGCCAACGAGTTG
GGCTTCGATACGATTGTGCTTGATCACCACCAGCCGCCCGCCAATTTACCACCTGCCTATGCCGTGGTTGACCCCAAACG
CAGCGATTGTGCCTATCCCTTCAAGGGATTGTGTGGGGTTGGCGTGGCCTTTAAATTGTATGAAGCGTTGTGGCGGGCAG
GCATTCAGCCTAACAACTTGCGAGCACGCGACATTCTCGATGTGGTGGCACTAGGCACAATCGCTGACATGATGCCCTTG
ACTGGCGAAAATCGGGTGTTGGTGCATTTTGGTTTGCAGGCCATGAACGAAAGCCAACGCCCAGGCTTAAAGGCGTTGTT
GCGAGTAGCGGGAGTTGAACAAGGCAAAATTGATGCAAGTAGCGTTGGATTTCGGCTTTCGCCACGAATTAATGCCGCTG
GCCGTTTGGTCGATGCGCGAATTGCCTATAGTTTGTTGCTGGCTCCCGATCAAGCCCAAGCTGATGGCTTTGCCGACCAA
TTAAATAGCACCAACATTGAGCGTCAAGCCCTAACCCGCGATGTTCAGCAGGCCGCCCGCGAATTAGCCCAAAATAGCGG
CCAGCTTGATCAACGTATTTTGGTGATTGTGGGCGAGGATTTTCATCATGGGGTGGTGGGCTTGGCAGCAGGCAAATTGG
CCGAAGAATTTGCGCGGCCTGTGCTGGTAATGGGCAAAGAAGAAGATCGTAGTCGGGGTAGCGCTCGTTCGATTCCAGGC
TTTAATATTGTCAATGCCTTGGCTGAATGTGCCGATTTGTTTGAAAAATATGGTGGCCATGCCGCCGCAGCTGGCTTTAC
GATCGCCAATGAGCATATTCCAGAGCTAGAACAACGCTTGCAAGCAATCGCCAATCAACAGATTACTGATGCGATGATGG
TGCCGCAGTTACCAATTGATGCTGAGGCGACGTTTGATCAACTGAATCTTGACACGCTGGCGGTGCTCGAAAAAATGGCT
CCGTTTGGGCTAGAAAATCCCCAACCACGCTTTTGCAGTCGGCGCGTAACGGTGATCGAGGCGCGTGGGGTTGGTGCTGA
AAATCAACATTTGCGCTTGCGTTTGCAACAAGGTCGCCATTATCAAACCGCAATTGGCTTTAACCTTGGCGATTGGTTGG
CAGAATTACCCAATGGTTCGCAGATCGATATCGTTTATACTGTGGGCATCAACGAATGGAATGGGCGCAGTTCGGTGCAA
CTTACGCTGGTCGATTTGCGCTTGAGTGAAGGGCAACGATGA

Upstream 100 bases:

>100_bases
TGCTTATGGCTCTATAATTTAAGTATTCAGCCAAACCAATTTGACGATTAGCCTGCTTGTCTCTACAATCGCCAAACTAA
TCCAGCTCGTGAGGGATTTT

Downstream 100 bases:

>100_bases
GCTTAGTTTTAGCCTCAGCTTGGCAGCCACGCGGCGAATTAGCCCGTTTTGAGCGGCTTTTACCTCAATTAAGCCAATTG
TATCGAGCAATTGTAATCAC

Product: single-stranded-DNA-specific exonuclease RecJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 573; Mature: 573

Protein sequence:

>573_residues
MLNQRVMRHWQLPTSASPSQLRSLGEYHPLLAAILWNRGWRDAAAVEQFLNIDWKQRHDPFLLHDMDRAVERIKQAVAQQ
QRVVVYGDFDTDGVTGVTLLMQLFKAFGLPVRPYIPKREGEGYGLNLAAIEKLHQEGLDLLVTVDCGISNVAEISRANEL
GFDTIVLDHHQPPANLPPAYAVVDPKRSDCAYPFKGLCGVGVAFKLYEALWRAGIQPNNLRARDILDVVALGTIADMMPL
TGENRVLVHFGLQAMNESQRPGLKALLRVAGVEQGKIDASSVGFRLSPRINAAGRLVDARIAYSLLLAPDQAQADGFADQ
LNSTNIERQALTRDVQQAARELAQNSGQLDQRILVIVGEDFHHGVVGLAAGKLAEEFARPVLVMGKEEDRSRGSARSIPG
FNIVNALAECADLFEKYGGHAAAAGFTIANEHIPELEQRLQAIANQQITDAMMVPQLPIDAEATFDQLNLDTLAVLEKMA
PFGLENPQPRFCSRRVTVIEARGVGAENQHLRLRLQQGRHYQTAIGFNLGDWLAELPNGSQIDIVYTVGINEWNGRSSVQ
LTLVDLRLSEGQR

Sequences:

>Translated_573_residues
MLNQRVMRHWQLPTSASPSQLRSLGEYHPLLAAILWNRGWRDAAAVEQFLNIDWKQRHDPFLLHDMDRAVERIKQAVAQQ
QRVVVYGDFDTDGVTGVTLLMQLFKAFGLPVRPYIPKREGEGYGLNLAAIEKLHQEGLDLLVTVDCGISNVAEISRANEL
GFDTIVLDHHQPPANLPPAYAVVDPKRSDCAYPFKGLCGVGVAFKLYEALWRAGIQPNNLRARDILDVVALGTIADMMPL
TGENRVLVHFGLQAMNESQRPGLKALLRVAGVEQGKIDASSVGFRLSPRINAAGRLVDARIAYSLLLAPDQAQADGFADQ
LNSTNIERQALTRDVQQAARELAQNSGQLDQRILVIVGEDFHHGVVGLAAGKLAEEFARPVLVMGKEEDRSRGSARSIPG
FNIVNALAECADLFEKYGGHAAAAGFTIANEHIPELEQRLQAIANQQITDAMMVPQLPIDAEATFDQLNLDTLAVLEKMA
PFGLENPQPRFCSRRVTVIEARGVGAENQHLRLRLQQGRHYQTAIGFNLGDWLAELPNGSQIDIVYTVGINEWNGRSSVQ
LTLVDLRLSEGQR
>Mature_573_residues
MLNQRVMRHWQLPTSASPSQLRSLGEYHPLLAAILWNRGWRDAAAVEQFLNIDWKQRHDPFLLHDMDRAVERIKQAVAQQ
QRVVVYGDFDTDGVTGVTLLMQLFKAFGLPVRPYIPKREGEGYGLNLAAIEKLHQEGLDLLVTVDCGISNVAEISRANEL
GFDTIVLDHHQPPANLPPAYAVVDPKRSDCAYPFKGLCGVGVAFKLYEALWRAGIQPNNLRARDILDVVALGTIADMMPL
TGENRVLVHFGLQAMNESQRPGLKALLRVAGVEQGKIDASSVGFRLSPRINAAGRLVDARIAYSLLLAPDQAQADGFADQ
LNSTNIERQALTRDVQQAARELAQNSGQLDQRILVIVGEDFHHGVVGLAAGKLAEEFARPVLVMGKEEDRSRGSARSIPG
FNIVNALAECADLFEKYGGHAAAAGFTIANEHIPELEQRLQAIANQQITDAMMVPQLPIDAEATFDQLNLDTLAVLEKMA
PFGLENPQPRFCSRRVTVIEARGVGAENQHLRLRLQQGRHYQTAIGFNLGDWLAELPNGSQIDIVYTVGINEWNGRSSVQ
LTLVDLRLSEGQR

Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=562, Percent_Identity=32.5622775800712, Blast_Score=268, Evalue=8e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610
- InterPro:   IPR018779 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 63202; Mature: 63202

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNQRVMRHWQLPTSASPSQLRSLGEYHPLLAAILWNRGWRDAAAVEQFLNIDWKQRHDP
CCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHCCCCC
FLLHDMDRAVERIKQAVAQQQRVVVYGDFDTDGVTGVTLLMQLFKAFGLPVRPYIPKREG
EEEHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
EGYGLNLAAIEKLHQEGLDLLVTVDCGISNVAEISRANELGFDTIVLDHHQPPANLPPAY
CCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCE
AVVDPKRSDCAYPFKGLCGVGVAFKLYEALWRAGIQPNNLRARDILDVVALGTIADMMPL
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
TGENRVLVHFGLQAMNESQRPGLKALLRVAGVEQGKIDASSVGFRLSPRINAAGRLVDAR
CCCCEEEEEECHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHCCEEECCCCCCCHHHHHHH
IAYSLLLAPDQAQADGFADQLNSTNIERQALTRDVQQAARELAQNSGQLDQRILVIVGED
HHHHHEECCCHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
FHHGVVGLAAGKLAEEFARPVLVMGKEEDRSRGSARSIPGFNIVNALAECADLFEKYGGH
CCCCHHHHHHHHHHHHHCCCEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
AAAAGFTIANEHIPELEQRLQAIANQQITDAMMVPQLPIDAEATFDQLNLDTLAVLEKMA
CHHCCCEECHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHC
PFGLENPQPRFCSRRVTVIEARGVGAENQHLRLRLQQGRHYQTAIGFNLGDWLAELPNGS
CCCCCCCCCHHHCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCHHHHHHHCCCCC
QIDIVYTVGINEWNGRSSVQLTLVDLRLSEGQR
EEEEEEEECCCCCCCCCEEEEEEEEEEECCCCC
>Mature Secondary Structure
MLNQRVMRHWQLPTSASPSQLRSLGEYHPLLAAILWNRGWRDAAAVEQFLNIDWKQRHDP
CCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHCCCCC
FLLHDMDRAVERIKQAVAQQQRVVVYGDFDTDGVTGVTLLMQLFKAFGLPVRPYIPKREG
EEEHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
EGYGLNLAAIEKLHQEGLDLLVTVDCGISNVAEISRANELGFDTIVLDHHQPPANLPPAY
CCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCE
AVVDPKRSDCAYPFKGLCGVGVAFKLYEALWRAGIQPNNLRARDILDVVALGTIADMMPL
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
TGENRVLVHFGLQAMNESQRPGLKALLRVAGVEQGKIDASSVGFRLSPRINAAGRLVDAR
CCCCEEEEEECHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHCCEEECCCCCCCHHHHHHH
IAYSLLLAPDQAQADGFADQLNSTNIERQALTRDVQQAARELAQNSGQLDQRILVIVGED
HHHHHEECCCHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
FHHGVVGLAAGKLAEEFARPVLVMGKEEDRSRGSARSIPGFNIVNALAECADLFEKYGGH
CCCCHHHHHHHHHHHHHCCCEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
AAAAGFTIANEHIPELEQRLQAIANQQITDAMMVPQLPIDAEATFDQLNLDTLAVLEKMA
CHHCCCEECHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHC
PFGLENPQPRFCSRRVTVIEARGVGAENQHLRLRLQQGRHYQTAIGFNLGDWLAELPNGS
CCCCCCCCCHHHCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCHHHHHHHCCCCC
QIDIVYTVGINEWNGRSSVQLTLVDLRLSEGQR
EEEEEEEECCCCCCCCCEEEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]