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The map label for this gene is xynB [H]

Identifier: 159901317

GI number: 159901317

Start: 6130186

End: 6132072

Strand: Direct

Name: xynB [H]

Synonym: Haur_4805

Alternate gene names: 159901317

Gene position: 6130186-6132072 (Clockwise)

Preceding gene: 159901316

Following gene: 159901323

Centisome position: 96.59

GC content: 50.13

Gene sequence:

>1887_bases
ATGAACAGCCGACGACGTTACTGGTGGATAGTGCTGATGTTAGGATTAATCGCGGGACAATTCAGTTGGTGGCAATCGAG
CAGCGGTCAAACTAGCCCGCAAACCTTGCGGGCTGCGGCTGGCACGTTTTTAATTGGCAGCGCTGCTGATAGCGATTTTT
GGAACTTCAGCGATCGCGCTCAATATGAGGCAATTTTGGGTGGCCAGTTTAATATTTATACCCCAGGTAACCAATTAAAG
TGGGATGCCGTGCATCCTCAACGTACAACCTACAATTTTGCTCCGGTTGATCGGCATATTCAAATTGCCAAAAGCTATGG
TCAGCAAATCCACGGCCATACCTTGCTCTGGCATCAACAAAACCCCGGTTGGGTCGCCAACCAACCCTGGACAGCCAGCG
AACTGACCAGCATTTTGTATGATCATATTGATACAGTGGTTGGTCGCTACAAAAACGATATTGCAATTTGGGATGTAGCC
AACGAAGTATTTGATGATAGCGGCGTGTATCGCCGTTCGTTTTGGTATAACACCATCGGCCAAAGCTATGTTGAGTTGGG
CTTCAGACGCGCTCGCCAAGCCGATTCGGATGCGGTGCTGATTTACAACGATTACAATATCGAAGAAGTTAACGCCAAAT
CGAATGCAGTCTATGCCATGGTCAGCGACTTTTTGGCGCGGGGTGTACCAATCGATGGGATTGGCTTTCAAATGCACTTG
CTCGGTTCTGGCATCAATTACAACAGCTTTGCCCAAAATATGCAGCGCTTTGCTGATTTGGGCTTGAAAATTTATGTAAC
TGAAGCCGATGTACGCTTGCAATTGCCCGCGACCAGCACAAGTTTGGCTCAACAAGCGACGGTCTATCAAAATGTGCTTG
ATCGCTGTTTGCGCCAGCCAGCATGTCAAGCTTTTCAATTTTGGGGCTTTACCGATAAATATTCGTGGGTTCCGAATACC
TTCCCAGGTTATGGCGCGGCCTTGATCTACGATGAACAATACAATCCCAAACCAGCCTATACCGCCATTTACAATCGTTT
ATTGCAAGGTCGGGGCGGCACGCCAACTCCAACCAGTGCCCCAACTGCTACGCGCACCCCAACCGCCCAACCAACTGCGA
CCAATACGGCGGTTCCAACTAACACGCCGACCAGTAGCCCAACACCCACCCAAACAGCGCCCAGACCAGCGCTGATTTTG
AGTGCGCCCAGCCAAGTAACGTTGGGTCAAGTCTTTACCTTGACGATTCAATATGTCAATATTGGCTTGCAATACACCAC
CGTAACTAGCAGCCCAGCTGGCTTGGTGCAGCTTGATCCACCGTTGAGTATGCCCTGTAAATATAACCAACACCCAACGC
AATGCAAAAATATCACCTTTAAAGCAACCGCTTTGGGTACGGTACAATTGAATGCCAGCGCAACTGGCGAAGTGCCAATT
GCTGGTGGTGGTTGGGCTTGGGGTTCAGCGTTTGCCCAAAATCCAGTCAGCGTCACCATTGTCGATAGTGTTCCAACCAA
CACCCCAACTCCAACGCTCACGCCAAGCCCAACCCCAATTAGTGGTGGTTGCCGCGTCAACTATGCGATCAACAGTCAAT
GGGGCAATGGATTTGTGGCAAACGTGACGGTGACCAACGCCAGCAACACGCCGATCAATGGCTGGGCGCTGAATTGGAGT
TTTGCTGGCAACCAGCAAATTAGCAATGCTTGGAATACCAGCCTAACCCAAACTGGCAATGCTGTAGTGGCTCGTAACGC
TGGCTGGAACAACCTTATTGCTGCGCAAGGCTCGGCCTCGTTTGGCTTCCAAGCCAGTTACAGCGGCTCAAATGCGATTC
CCAGCAGCTTTAGTTTGAATGGTGTGGCTTGTAGCATCGTGCCATAA

Upstream 100 bases:

>100_bases
GGAGCGGTCTCAAAGTAGAAAATTAACCGTGATGCTGCTCAAACGTCATTGCTTTCATCGTACTAGCCTGCCGCATCGCA
CGCTTGATCAAGGAGGATCG

Downstream 100 bases:

>100_bases
ATAGTCATGCCCTCACCCTGCGTTTTCTCTCGTAGTGGGAGCAGCAGGGTGAGGGCACTAAGTCAAGCCGAGCGTCCTAC
AATTTACGGTTGCTTACGAC

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 628; Mature: 628

Protein sequence:

>628_residues
MNSRRRYWWIVLMLGLIAGQFSWWQSSSGQTSPQTLRAAAGTFLIGSAADSDFWNFSDRAQYEAILGGQFNIYTPGNQLK
WDAVHPQRTTYNFAPVDRHIQIAKSYGQQIHGHTLLWHQQNPGWVANQPWTASELTSILYDHIDTVVGRYKNDIAIWDVA
NEVFDDSGVYRRSFWYNTIGQSYVELGFRRARQADSDAVLIYNDYNIEEVNAKSNAVYAMVSDFLARGVPIDGIGFQMHL
LGSGINYNSFAQNMQRFADLGLKIYVTEADVRLQLPATSTSLAQQATVYQNVLDRCLRQPACQAFQFWGFTDKYSWVPNT
FPGYGAALIYDEQYNPKPAYTAIYNRLLQGRGGTPTPTSAPTATRTPTAQPTATNTAVPTNTPTSSPTPTQTAPRPALIL
SAPSQVTLGQVFTLTIQYVNIGLQYTTVTSSPAGLVQLDPPLSMPCKYNQHPTQCKNITFKATALGTVQLNASATGEVPI
AGGGWAWGSAFAQNPVSVTIVDSVPTNTPTPTLTPSPTPISGGCRVNYAINSQWGNGFVANVTVTNASNTPINGWALNWS
FAGNQQISNAWNTSLTQTGNAVVARNAGWNNLIAAQGSASFGFQASYSGSNAIPSSFSLNGVACSIVP

Sequences:

>Translated_628_residues
MNSRRRYWWIVLMLGLIAGQFSWWQSSSGQTSPQTLRAAAGTFLIGSAADSDFWNFSDRAQYEAILGGQFNIYTPGNQLK
WDAVHPQRTTYNFAPVDRHIQIAKSYGQQIHGHTLLWHQQNPGWVANQPWTASELTSILYDHIDTVVGRYKNDIAIWDVA
NEVFDDSGVYRRSFWYNTIGQSYVELGFRRARQADSDAVLIYNDYNIEEVNAKSNAVYAMVSDFLARGVPIDGIGFQMHL
LGSGINYNSFAQNMQRFADLGLKIYVTEADVRLQLPATSTSLAQQATVYQNVLDRCLRQPACQAFQFWGFTDKYSWVPNT
FPGYGAALIYDEQYNPKPAYTAIYNRLLQGRGGTPTPTSAPTATRTPTAQPTATNTAVPTNTPTSSPTPTQTAPRPALIL
SAPSQVTLGQVFTLTIQYVNIGLQYTTVTSSPAGLVQLDPPLSMPCKYNQHPTQCKNITFKATALGTVQLNASATGEVPI
AGGGWAWGSAFAQNPVSVTIVDSVPTNTPTPTLTPSPTPISGGCRVNYAINSQWGNGFVANVTVTNASNTPINGWALNWS
FAGNQQISNAWNTSLTQTGNAVVARNAGWNNLIAAQGSASFGFQASYSGSNAIPSSFSLNGVACSIVP
>Mature_628_residues
MNSRRRYWWIVLMLGLIAGQFSWWQSSSGQTSPQTLRAAAGTFLIGSAADSDFWNFSDRAQYEAILGGQFNIYTPGNQLK
WDAVHPQRTTYNFAPVDRHIQIAKSYGQQIHGHTLLWHQQNPGWVANQPWTASELTSILYDHIDTVVGRYKNDIAIWDVA
NEVFDDSGVYRRSFWYNTIGQSYVELGFRRARQADSDAVLIYNDYNIEEVNAKSNAVYAMVSDFLARGVPIDGIGFQMHL
LGSGINYNSFAQNMQRFADLGLKIYVTEADVRLQLPATSTSLAQQATVYQNVLDRCLRQPACQAFQFWGFTDKYSWVPNT
FPGYGAALIYDEQYNPKPAYTAIYNRLLQGRGGTPTPTSAPTATRTPTAQPTATNTAVPTNTPTSSPTPTQTAPRPALIL
SAPSQVTLGQVFTLTIQYVNIGLQYTTVTSSPAGLVQLDPPLSMPCKYNQHPTQCKNITFKATALGTVQLNASATGEVPI
AGGGWAWGSAFAQNPVSVTIVDSVPTNTPTPTLTPSPTPISGGCRVNYAINSQWGNGFVANVTVTNASNTPINGWALNWS
FAGNQQISNAWNTSLTQTGNAVVARNAGWNNLIAAQGSASFGFQASYSGSNAIPSSFSLNGVACSIVP

Specific function: Unknown

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 68354; Mature: 68354

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSRRRYWWIVLMLGLIAGQFSWWQSSSGQTSPQTLRAAAGTFLIGSAADSDFWNFSDRA
CCCCCHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
QYEAILGGQFNIYTPGNQLKWDAVHPQRTTYNFAPVDRHIQIAKSYGQQIHGHTLLWHQQ
CEEEEECCEEEEECCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEEC
NPGWVANQPWTASELTSILYDHIDTVVGRYKNDIAIWDVANEVFDDSGVYRRSFWYNTIG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHCCCCCEEEHHHHHHHH
QSYVELGFRRARQADSDAVLIYNDYNIEEVNAKSNAVYAMVSDFLARGVPIDGIGFQMHL
HHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEE
LGSGINYNSFAQNMQRFADLGLKIYVTEADVRLQLPATSTSLAQQATVYQNVLDRCLRQP
EECCCCHHHHHHHHHHHHHCCEEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHCCH
ACQAFQFWGFTDKYSWVPNTFPGYGAALIYDEQYNPKPAYTAIYNRLLQGRGGTPTPTSA
HHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
PTATRTPTAQPTATNTAVPTNTPTSSPTPTQTAPRPALILSAPSQVTLGQVFTLTIQYVN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEECCEEEEEEEEEEE
IGLQYTTVTSSPAGLVQLDPPLSMPCKYNQHPTQCKNITFKATALGTVQLNASATGEVPI
EEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCHHHCEEEEEEEEEEEEECCCCCCCEEE
AGGGWAWGSAFAQNPVSVTIVDSVPTNTPTPTLTPSPTPISGGCRVNYAINSQWGNGFVA
CCCCCCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEE
NVTVTNASNTPINGWALNWSFAGNQQISNAWNTSLTQTGNAVVARNAGWNNLIAAQGSAS
EEEEECCCCCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCEEEEECCCCCCEEEECCCCC
FGFQASYSGSNAIPSSFSLNGVACSIVP
CCEEEECCCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MNSRRRYWWIVLMLGLIAGQFSWWQSSSGQTSPQTLRAAAGTFLIGSAADSDFWNFSDRA
CCCCCHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCC
QYEAILGGQFNIYTPGNQLKWDAVHPQRTTYNFAPVDRHIQIAKSYGQQIHGHTLLWHQQ
CEEEEECCEEEEECCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEEC
NPGWVANQPWTASELTSILYDHIDTVVGRYKNDIAIWDVANEVFDDSGVYRRSFWYNTIG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHCCCCCEEEHHHHHHHH
QSYVELGFRRARQADSDAVLIYNDYNIEEVNAKSNAVYAMVSDFLARGVPIDGIGFQMHL
HHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEE
LGSGINYNSFAQNMQRFADLGLKIYVTEADVRLQLPATSTSLAQQATVYQNVLDRCLRQP
EECCCCHHHHHHHHHHHHHCCEEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHCCH
ACQAFQFWGFTDKYSWVPNTFPGYGAALIYDEQYNPKPAYTAIYNRLLQGRGGTPTPTSA
HHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
PTATRTPTAQPTATNTAVPTNTPTSSPTPTQTAPRPALILSAPSQVTLGQVFTLTIQYVN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEECCEEEEEEEEEEE
IGLQYTTVTSSPAGLVQLDPPLSMPCKYNQHPTQCKNITFKATALGTVQLNASATGEVPI
EEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCHHHCEEEEEEEEEEEEECCCCCCCEEE
AGGGWAWGSAFAQNPVSVTIVDSVPTNTPTPTLTPSPTPISGGCRVNYAINSQWGNGFVA
CCCCCCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEE
NVTVTNASNTPINGWALNWSFAGNQQISNAWNTSLTQTGNAVVARNAGWNNLIAAQGSAS
EEEEECCCCCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCEEEEECCCCCCEEEECCCCC
FGFQASYSGSNAIPSSFSLNGVACSIVP
CCEEEECCCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA