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The map label for this gene is ydcM [C]

Identifier: 159901249

GI number: 159901249

Start: 6047072

End: 6048187

Strand: Direct

Name: ydcM [C]

Synonym: Haur_4737

Alternate gene names: 159901249

Gene position: 6047072-6048187 (Clockwise)

Preceding gene: 159901248

Following gene: 159901252

Centisome position: 95.28

GC content: 51.97

Gene sequence:

>1116_bases
ATGCGAACGCTGACCCGTTGCTATAAATATCGCCTGTATCCTGCCACTGACCAACAAAACACCTTGGTACAGTGGGCGGG
TTGCCGACGATTTGTCTGGAATTGGGCATTGCACTGCAAGCAAACCCACTACCAAGCAACGGGTCAACGGCTGAGCTATC
AACGGCTTGCGGCGATGTTGGTTGATCTGAAACGTCAGCCCAAAACGGCATTTTTGCGTGATTGCCATTCGCAACCCTTG
CAACAAGCGCTGATGGATTTAGAAACGGCCTTTACTCACTTTTTTGCCAAACGGGCGAAGTATCCCCGTTTCAAAGCACG
CAAAGTCACACCGCATAGCCTCCGCTTCCCGCAAGGCGTGGTCGTCGTTGATGAACACACCATCAGCGTGCCAAAAATCG
GGCTGATGCAGGCGATCATTCATCGCCCACTGCTGGGAACAGCAAAGGGCGCAACGATCAAACAAGACGCAACGGGTGCA
TGGTGGGTCGTTTTTGTTTGCCACATCAACCGCCCTGATGTTTTGCTAACTACTGATAATCCTGTGGGCATTGATGTGGG
ACTTGAATCCTTCACTACCCTGTCAACGGGAGAGAAAACTACACCGCCCAAATTCTACCGTCGAAGCCAAAAGAAACTTG
CCCGTGCTCAGCGGAAACTCTCACGCGCCCAAAAGGGCAGCAACAACCGCTTGAAAGCTCGTAAGCACGTTGCCAAAATT
CACCAGAAAATTAGCAACCAACGCGCCGATTGGCTGCATAAGCATGCGTTGGGGATCGTTCGCCAATTTGATGTGGTGTG
CATTGAAGACCTGAATCTCAAAGGCCTTGCGAAAACCAAGCTGGCCAAATCATTCAGTGATGCCGCCCTGAGTACCTTCA
TGCAGATGTTACACGATAAAGCGGAATGGCACGGACGGCGAGTGATTAAGGTTGGGCGGTTCTACGCCTCATCAAAAACC
TGCCATCACTGCCAAACGAAAACCGCCTTGATGCTATCAGATCGCGTGTGGACATGCCCCACCTGTGGCACGATCCATGA
TCGCGATAGGAATGCGGCGATCAACATCGTGCACGAAGGAATACGCCTGCTTGCCGTTGGGACGACGGAAAGCTAA

Upstream 100 bases:

>100_bases
GTAGTGGACTCTGGACAGACGGTTATTACTATGGTTCGGCGGGAACGGTTTCCGCCCAAACCATCGCCATGGATATCGCC
AACCAAAAGGAAGTCTAATC

Downstream 100 bases:

>100_bases
AACGCTGCTCGAGATGGTGTAAATCCAGCGAAACGTTGGTAGCTGTCGTTGAAGGCAGAAGCCACGCCCCTCGTGGGCGT
GGTAGTTCACTCTTTCCAAG

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MRTLTRCYKYRLYPATDQQNTLVQWAGCRRFVWNWALHCKQTHYQATGQRLSYQRLAAMLVDLKRQPKTAFLRDCHSQPL
QQALMDLETAFTHFFAKRAKYPRFKARKVTPHSLRFPQGVVVVDEHTISVPKIGLMQAIIHRPLLGTAKGATIKQDATGA
WWVVFVCHINRPDVLLTTDNPVGIDVGLESFTTLSTGEKTTPPKFYRRSQKKLARAQRKLSRAQKGSNNRLKARKHVAKI
HQKISNQRADWLHKHALGIVRQFDVVCIEDLNLKGLAKTKLAKSFSDAALSTFMQMLHDKAEWHGRRVIKVGRFYASSKT
CHHCQTKTALMLSDRVWTCPTCGTIHDRDRNAAINIVHEGIRLLAVGTTES

Sequences:

>Translated_371_residues
MRTLTRCYKYRLYPATDQQNTLVQWAGCRRFVWNWALHCKQTHYQATGQRLSYQRLAAMLVDLKRQPKTAFLRDCHSQPL
QQALMDLETAFTHFFAKRAKYPRFKARKVTPHSLRFPQGVVVVDEHTISVPKIGLMQAIIHRPLLGTAKGATIKQDATGA
WWVVFVCHINRPDVLLTTDNPVGIDVGLESFTTLSTGEKTTPPKFYRRSQKKLARAQRKLSRAQKGSNNRLKARKHVAKI
HQKISNQRADWLHKHALGIVRQFDVVCIEDLNLKGLAKTKLAKSFSDAALSTFMQMLHDKAEWHGRRVIKVGRFYASSKT
CHHCQTKTALMLSDRVWTCPTCGTIHDRDRNAAINIVHEGIRLLAVGTTES
>Mature_371_residues
MRTLTRCYKYRLYPATDQQNTLVQWAGCRRFVWNWALHCKQTHYQATGQRLSYQRLAAMLVDLKRQPKTAFLRDCHSQPL
QQALMDLETAFTHFFAKRAKYPRFKARKVTPHSLRFPQGVVVVDEHTISVPKIGLMQAIIHRPLLGTAKGATIKQDATGA
WWVVFVCHINRPDVLLTTDNPVGIDVGLESFTTLSTGEKTTPPKFYRRSQKKLARAQRKLSRAQKGSNNRLKARKHVAKI
HQKISNQRADWLHKHALGIVRQFDVVCIEDLNLKGLAKTKLAKSFSDAALSTFMQMLHDKAEWHGRRVIKVGRFYASSKT
CHHCQTKTALMLSDRVWTCPTCGTIHDRDRNAAINIVHEGIRLLAVGTTES

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=361, Percent_Identity=33.5180055401662, Blast_Score=191, Evalue=8e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 42400; Mature: 42400

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLTRCYKYRLYPATDQQNTLVQWAGCRRFVWNWALHCKQTHYQATGQRLSYQRLAAML
CCCHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDLKRQPKTAFLRDCHSQPLQQALMDLETAFTHFFAKRAKYPRFKARKVTPHSLRFPQGV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCE
VVVDEHTISVPKIGLMQAIIHRPLLGTAKGATIKQDATGAWWVVFVCHINRPDVLLTTDN
EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCEEEECCC
PVGIDVGLESFTTLSTGEKTTPPKFYRRSQKKLARAQRKLSRAQKGSNNRLKARKHVAKI
CCEEEECCHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
HQKISNQRADWLHKHALGIVRQFDVVCIEDLNLKGLAKTKLAKSFSDAALSTFMQMLHDK
HHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AEWHGRRVIKVGRFYASSKTCHHCQTKTALMLSDRVWTCPTCGTIHDRDRNAAINIVHEG
HHHCCCEEEEEHHHHHCCCCHHHHCCCCEEEECCCEEECCCCCCCCCCCCCHHHHEEECC
IRLLAVGTTES
EEEEEEECCCC
>Mature Secondary Structure
MRTLTRCYKYRLYPATDQQNTLVQWAGCRRFVWNWALHCKQTHYQATGQRLSYQRLAAML
CCCHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDLKRQPKTAFLRDCHSQPLQQALMDLETAFTHFFAKRAKYPRFKARKVTPHSLRFPQGV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCE
VVVDEHTISVPKIGLMQAIIHRPLLGTAKGATIKQDATGAWWVVFVCHINRPDVLLTTDN
EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCEEEECCC
PVGIDVGLESFTTLSTGEKTTPPKFYRRSQKKLARAQRKLSRAQKGSNNRLKARKHVAKI
CCEEEECCHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
HQKISNQRADWLHKHALGIVRQFDVVCIEDLNLKGLAKTKLAKSFSDAALSTFMQMLHDK
HHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AEWHGRRVIKVGRFYASSKTCHHCQTKTALMLSDRVWTCPTCGTIHDRDRNAAINIVHEG
HHHCCCEEEEEHHHHHCCCCHHHHCCCCEEEECCCEEECCCCCCCCCCCCCHHHHEEECC
IRLLAVGTTES
EEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]