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The map label for this gene is ygaF [H]

Identifier: 159901222

GI number: 159901222

Start: 6016476

End: 6016940

Strand: Reverse

Name: ygaF [H]

Synonym: Haur_4710

Alternate gene names: 159901222

Gene position: 6016940-6016476 (Counterclockwise)

Preceding gene: 159901223

Following gene: 159901221

Centisome position: 94.81

GC content: 49.68

Gene sequence:

>465_bases
ATGACAACATTAAACGTTGGCGATCTTGCGCCAGAATTTGAATTGCCCGCCGATAATGGGGAAACGATTCGCTTGAGCGA
TTTTCGGGGCAAGCGTGTGGTGCTCTATTTTTATCCCAAAGATGATACGCCTGGCTGCACCACCCAAGCCTGTGGTTTTC
GCGATGCCTATCCACAAATCGAGGAACAAAATGCCGTCGTGATCGGGGTCAGCCCAGATTCGGTGGCTTCGCACCAAAAA
TTCAAAACCAAGTTTGATCTGCCATTTTTGCTGGTGGCCGACGAGCAACATAGCCTCGCTGAGGCCTACGGGGTTTGGGG
CGAGAAGTCGATGTACGGCAAAAAATATATGGGCGTAACTCGTTCGCACTTTATCATCGACGAAAACGGCTATTTAATCG
ATGTTCAAGGCAAAATCAGCCCCGCCGATAGTGTCAGCGGCGCGTTGAAGTTGCTGATTAAGTAA

Upstream 100 bases:

>100_bases
TTTGTGCGCTTCGTGATTAAATTTCATACTTCAGCATTCATCCTTGCTTAAAACAGGCTACAATACATCCAATCAACTCT
TTTGTGTGAGGCTTTTACTG

Downstream 100 bases:

>100_bases
GTATTTGTACCCCAACTCAGGCTTGTTTGAGTTGGGGTGTTTTAGGTTAAATAGAAAGTTGTATGGCAAAACGAAAATTT
TATGCGGTGGTCAAGGGTCG

Product: peroxiredoxin

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MTTLNVGDLAPEFELPADNGETIRLSDFRGKRVVLYFYPKDDTPGCTTQACGFRDAYPQIEEQNAVVIGVSPDSVASHQK
FKTKFDLPFLLVADEQHSLAEAYGVWGEKSMYGKKYMGVTRSHFIIDENGYLIDVQGKISPADSVSGALKLLIK

Sequences:

>Translated_154_residues
MTTLNVGDLAPEFELPADNGETIRLSDFRGKRVVLYFYPKDDTPGCTTQACGFRDAYPQIEEQNAVVIGVSPDSVASHQK
FKTKFDLPFLLVADEQHSLAEAYGVWGEKSMYGKKYMGVTRSHFIIDENGYLIDVQGKISPADSVSGALKLLIK
>Mature_153_residues
TTLNVGDLAPEFELPADNGETIRLSDFRGKRVVLYFYPKDDTPGCTTQACGFRDAYPQIEEQNAVVIGVSPDSVASHQKF
KTKFDLPFLLVADEQHSLAEAYGVWGEKSMYGKKYMGVTRSHFIIDENGYLIDVQGKISPADSVSGALKLLIK

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Escherichia coli, GI1788825, Length=132, Percent_Identity=46.969696969697, Blast_Score=136, Evalue=6e-34,
Organism=Caenorhabditis elegans, GI193204376, Length=165, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI32565831, Length=165, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322180, Length=156, Percent_Identity=39.1025641025641, Blast_Score=95, Evalue=5e-21,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 17040; Mature: 16909

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLNVGDLAPEFELPADNGETIRLSDFRGKRVVLYFYPKDDTPGCTTQACGFRDAYPQI
CCEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
EEQNAVVIGVSPDSVASHQKFKTKFDLPFLLVADEQHSLAEAYGVWGEKSMYGKKYMGVT
CCCCEEEEEECCCCCCCCCCCCEECCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCC
RSHFIIDENGYLIDVQGKISPADSVSGALKLLIK
CEEEEECCCCEEEEECCCCCCCCHHCCEEEEEEC
>Mature Secondary Structure 
TTLNVGDLAPEFELPADNGETIRLSDFRGKRVVLYFYPKDDTPGCTTQACGFRDAYPQI
CEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
EEQNAVVIGVSPDSVASHQKFKTKFDLPFLLVADEQHSLAEAYGVWGEKSMYGKKYMGVT
CCCCEEEEEECCCCCCCCCCCCEECCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCC
RSHFIIDENGYLIDVQGKISPADSVSGALKLLIK
CEEEEECCCCEEEEECCCCCCCCHHCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]