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The map label for this gene is ysgA [H]

Identifier: 159901149

GI number: 159901149

Start: 5926262

End: 5927050

Strand: Reverse

Name: ysgA [H]

Synonym: Haur_4637

Alternate gene names: 159901149

Gene position: 5927050-5926262 (Counterclockwise)

Preceding gene: 159901150

Following gene: 159901145

Centisome position: 93.39

GC content: 52.98

Gene sequence:

>789_bases
GTGTTGATCGACCTCATTACCAGCACTGCTAATCATCACGTTAAATACCTGCGTTCGTTGTTGCGTTCCCGTAAGGATCG
TCATAGCGAACGCAGGTTTGTTGTTGAAGGGGTGCGCTTGGTTGGCGAAGCGCTCAATTTTGCCACACCAAGTTTGTTGC
TCTATGTGCCTGAGCAGTTGGCAAGCACCGAACGCGGCCAGCAGTTGCTCGATCTCATTGCTCAATTGCCCAATGCTTTT
GCAACAACCCCAGCAATCTTGGCTGGACTCAGCGATGTTGAGACCCCTCAAGGCATCATCGCGGTTATCCCAATGCCTCA
ATTCACCAGCCAATCAGCCTCATTAATCTTGATGCTCGATGGCGTGCAAGATCCTGGCAATGTTGGCACGCTGTTGCGCT
CAGCCGAAGCCGCTGGCGTTGGCCAAGTGTTGTGTTTACCAGGCACTGCCGATGTGTGGAGTCCCAAAGTTGTGCGCTCA
GGTATGGGCGTGCATTTTCGGCTACCCATCGTCGATGGCTTAAATTGGGAAACTGCCTTGCCGCTGATTGAGCATTGCCA
ACAACGCTTCGCGGCGGTGCAAGATTCACCCTTATCCTATGATCAGGCTGATTTGACCCAACCAACTGTGTTGATTATCG
GCAATGAAGCTAACGGCGTTTCGGCCACCACCCTCAGCTATTCCAGCACCATCACCATCCCCATGCTTGGCTCGCTCGAA
TCGTTGAATGCTGCGGTTGCCGGCAGTGTGTTATTATTCGAGGCCGCCCGCCAACGCCGAGTAAAGTAA

Upstream 100 bases:

>100_bases
CGCCGCCAATTGGCCGACTTGGCTGTCCGCGATGCTGCCGCTTTCACGGCAATTGTCGCTCAAGCTAAGCAAGCTTTGGC
CTAGTTCAAGGCATGGTGCT

Downstream 100 bases:

>100_bases
AAAGTCAGAAATCAAAAGGCAAAAAGCTCAATTAATGCAGTAGAGCAAGGGTTATAGACTTCATCCAAAATTCTCTGCGC
CGCTGCGTTAAAAAATTATT

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MLIDLITSTANHHVKYLRSLLRSRKDRHSERRFVVEGVRLVGEALNFATPSLLLYVPEQLASTERGQQLLDLIAQLPNAF
ATTPAILAGLSDVETPQGIIAVIPMPQFTSQSASLILMLDGVQDPGNVGTLLRSAEAAGVGQVLCLPGTADVWSPKVVRS
GMGVHFRLPIVDGLNWETALPLIEHCQQRFAAVQDSPLSYDQADLTQPTVLIIGNEANGVSATTLSYSSTITIPMLGSLE
SLNAAVAGSVLLFEAARQRRVK

Sequences:

>Translated_262_residues
MLIDLITSTANHHVKYLRSLLRSRKDRHSERRFVVEGVRLVGEALNFATPSLLLYVPEQLASTERGQQLLDLIAQLPNAF
ATTPAILAGLSDVETPQGIIAVIPMPQFTSQSASLILMLDGVQDPGNVGTLLRSAEAAGVGQVLCLPGTADVWSPKVVRS
GMGVHFRLPIVDGLNWETALPLIEHCQQRFAAVQDSPLSYDQADLTQPTVLIIGNEANGVSATTLSYSSTITIPMLGSLE
SLNAAVAGSVLLFEAARQRRVK
>Mature_262_residues
MLIDLITSTANHHVKYLRSLLRSRKDRHSERRFVVEGVRLVGEALNFATPSLLLYVPEQLASTERGQQLLDLIAQLPNAF
ATTPAILAGLSDVETPQGIIAVIPMPQFTSQSASLILMLDGVQDPGNVGTLLRSAEAAGVGQVLCLPGTADVWSPKVVRS
GMGVHFRLPIVDGLNWETALPLIEHCQQRFAAVQDSPLSYDQADLTQPTVLIIGNEANGVSATTLSYSSTITIPMLGSLE
SLNAAVAGSVLLFEAARQRRVK

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=311, Percent_Identity=30.2250803858521, Blast_Score=128, Evalue=5e-30,
Organism=Escherichia coli, GI1790623, Length=181, Percent_Identity=33.1491712707182, Blast_Score=74, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24666840, Length=290, Percent_Identity=29.6551724137931, Blast_Score=100, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28145; Mature: 28145

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIDLITSTANHHVKYLRSLLRSRKDRHSERRFVVEGVRLVGEALNFATPSLLLYVPEQL
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECHHH
ASTERGQQLLDLIAQLPNAFATTPAILAGLSDVETPQGIIAVIPMPQFTSQSASLILMLD
HHHHHHHHHHHHHHHCCCHHCCCHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEE
GVQDPGNVGTLLRSAEAAGVGQVLCLPGTADVWSPKVVRSGMGVHFRLPIVDGLNWETAL
CCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCCCEEEEEEEECCCCHHHHH
PLIEHCQQRFAAVQDSPLSYDQADLTQPTVLIIGNEANGVSATTLSYSSTITIPMLGSLE
HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCHH
SLNAAVAGSVLLFEAARQRRVK
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLIDLITSTANHHVKYLRSLLRSRKDRHSERRFVVEGVRLVGEALNFATPSLLLYVPEQL
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECHHH
ASTERGQQLLDLIAQLPNAFATTPAILAGLSDVETPQGIIAVIPMPQFTSQSASLILMLD
HHHHHHHHHHHHHHHCCCHHCCCHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEE
GVQDPGNVGTLLRSAEAAGVGQVLCLPGTADVWSPKVVRSGMGVHFRLPIVDGLNWETAL
CCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCCCEEEEEEEECCCCHHHHH
PLIEHCQQRFAAVQDSPLSYDQADLTQPTVLIIGNEANGVSATTLSYSSTITIPMLGSLE
HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCHH
SLNAAVAGSVLLFEAARQRRVK
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]