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The map label for this gene is 159901132

Identifier: 159901132

GI number: 159901132

Start: 5906105

End: 5906368

Strand: Reverse

Name: 159901132

Synonym: Haur_4620

Alternate gene names: NA

Gene position: 5906368-5906105 (Counterclockwise)

Preceding gene: 159901133

Following gene: 159901131

Centisome position: 93.06

GC content: 52.65

Gene sequence:

>264_bases
ATGCCTCGCACCCGCCGATTGCCCAAGGATGCAGCTATGGAAGATTTATTGAAGTATATCGTCGAAGGCCTGATCGACAC
CGACGAAATTAAAATTAGCAAACGCACTGGTCACCACAGCATTACCCTCGATCTGCGCATTCCCCAAAGCGAAGCAGGGA
AGGTCATCGGGCGCAATGGGCGTGTGGTCAAAGCCATTCGCGACGTATTGGGCATCGTTGGCGCTCGCCAAAACAAACGG
GTCCACCTAGAGGTTAATTCGTGA

Upstream 100 bases:

>100_bases
GAATTGTGGTTCGACACCGTGGAAAGTGCCGAAGCCGCTGGCTTCCGCGCTCCTGGTCAAAAAAGCGCCGAGTAAGCTCG
CGAAGCGGGTGTGAGGCCGC

Downstream 100 bases:

>100_bases
CAGCTCCAAATCAAGATGATTTCTTGTTAGTTGGCCGCATTTCAGCGGCGTTTGGCGTGCGCGGCGAGTTGAAGATTTCA
ATGATCTCATCGCACCCCGA

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 86

Protein sequence:

>87_residues
MPRTRRLPKDAAMEDLLKYIVEGLIDTDEIKISKRTGHHSITLDLRIPQSEAGKVIGRNGRVVKAIRDVLGIVGARQNKR
VHLEVNS

Sequences:

>Translated_87_residues
MPRTRRLPKDAAMEDLLKYIVEGLIDTDEIKISKRTGHHSITLDLRIPQSEAGKVIGRNGRVVKAIRDVLGIVGARQNKR
VHLEVNS
>Mature_86_residues
PRTRRLPKDAAMEDLLKYIVEGLIDTDEIKISKRTGHHSITLDLRIPQSEAGKVIGRNGRVVKAIRDVLGIVGARQNKRV
HLEVNS

Specific function: Unknown

COG id: COG1837

COG function: function code R; Predicted RNA-binding protein (contains KH domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009019
- InterPro:   IPR018111
- InterPro:   IPR020627 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 9765; Mature: 9633

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRTRRLPKDAAMEDLLKYIVEGLIDTDEIKISKRTGHHSITLDLRIPQSEAGKVIGRNG
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEECCCCCCCCEECCCC
RVVKAIRDVLGIVGARQNKRVHLEVNS
CHHHHHHHHHHHHCCCCCCEEEEEECC
>Mature Secondary Structure 
PRTRRLPKDAAMEDLLKYIVEGLIDTDEIKISKRTGHHSITLDLRIPQSEAGKVIGRNG
CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEECCCCCCCCEECCCC
RVVKAIRDVLGIVGARQNKRVHLEVNS
CHHHHHHHHHHHHCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]