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The map label for this gene is rimM

Identifier: 159901131

GI number: 159901131

Start: 5905584

End: 5906108

Strand: Reverse

Name: rimM

Synonym: Haur_4619

Alternate gene names: 159901131

Gene position: 5906108-5905584 (Counterclockwise)

Preceding gene: 159901132

Following gene: 159901130

Centisome position: 93.06

GC content: 49.33

Gene sequence:

>525_bases
GTGACAGCTCCAAATCAAGATGATTTCTTGTTAGTTGGCCGCATTTCAGCGGCGTTTGGCGTGCGCGGCGAGTTGAAGAT
TTCAATGATCTCATCGCACCCCGAACATATTCAAAAACTTAAACAATTGTTTGTGGGCGATCTTTCCAAGCCTTATACGA
TTGGCCGCCTGCACCAACACAAAGGCAGCCTGTATTTGTTGCGGCTGAATGAGGTTGATACCCGCGACGCTGCCGAAGCG
ATGCAAGGCCTTGAAGCCTATATTCATCGCAGCGATGCAGCGCCCTTGGCCAATGATGAATATTTCTTGCACGATTTGGT
TGGCTTGCAAGTGCAAACTGAGGCCGGCGAAGACATTGGGCGAGCAGTTGAAATTATTGAAACTGGCGCAAATGATGTAT
TAGTCGTTCGCAAATTAGGCCAAGCCGATATTTTAGTGCCGATGGTGCGCACGGTCGTTCGCTCAATTGATATTGCTGGC
GGCACGATCACCGTAACCTCGCTAGCCGATATTGTGCCTGAGTAA

Upstream 100 bases:

>100_bases
AGGTCATCGGGCGCAATGGGCGTGTGGTCAAAGCCATTCGCGACGTATTGGGCATCGTTGGCGCTCGCCAAAACAAACGG
GTCCACCTAGAGGTTAATTC

Downstream 100 bases:

>100_bases
ACGCCTCAGCTTTCCCACCAATCTGAATTGACAGCGGCTCATTGCACTGCTACGATGAAGCCGCACCTTGCTTCTAGCCT
CAGGTATCAGTCGGAGAATA

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MTAPNQDDFLLVGRISAAFGVRGELKISMISSHPEHIQKLKQLFVGDLSKPYTIGRLHQHKGSLYLLRLNEVDTRDAAEA
MQGLEAYIHRSDAAPLANDEYFLHDLVGLQVQTEAGEDIGRAVEIIETGANDVLVVRKLGQADILVPMVRTVVRSIDIAG
GTITVTSLADIVPE

Sequences:

>Translated_174_residues
MTAPNQDDFLLVGRISAAFGVRGELKISMISSHPEHIQKLKQLFVGDLSKPYTIGRLHQHKGSLYLLRLNEVDTRDAAEA
MQGLEAYIHRSDAAPLANDEYFLHDLVGLQVQTEAGEDIGRAVEIIETGANDVLVVRKLGQADILVPMVRTVVRSIDIAG
GTITVTSLADIVPE
>Mature_173_residues
TAPNQDDFLLVGRISAAFGVRGELKISMISSHPEHIQKLKQLFVGDLSKPYTIGRLHQHKGSLYLLRLNEVDTRDAAEAM
QGLEAYIHRSDAAPLANDEYFLHDLVGLQVQTEAGEDIGRAVEIIETGANDVLVVRKLGQADILVPMVRTVVRSIDIAGG
TITVTSLADIVPE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=172, Percent_Identity=28.4883720930233, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_HERA2 (A9B0N2)

Other databases:

- EMBL:   CP000875
- RefSeq:   YP_001547378.1
- ProteinModelPortal:   A9B0N2
- SMR:   A9B0N2
- GeneID:   5736466
- GenomeReviews:   CP000875_GR
- KEGG:   hau:Haur_4619
- HOGENOM:   HBG703775
- OMA:   TSCHGIN
- ProtClustDB:   CLSK973478
- BioCyc:   HAUR316274:HAUR_4619-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18982; Mature: 18851

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPNQDDFLLVGRISAAFGVRGELKISMISSHPEHIQKLKQLFVGDLSKPYTIGRLHQH
CCCCCCCCEEEEEEEHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEHHHCCC
KGSLYLLRLNEVDTRDAAEAMQGLEAYIHRSDAAPLANDEYFLHDLVGLQVQTEAGEDIG
CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCEEECCCCHHHH
RAVEIIETGANDVLVVRKLGQADILVPMVRTVVRSIDIAGGTITVTSLADIVPE
HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHCCC
>Mature Secondary Structure 
TAPNQDDFLLVGRISAAFGVRGELKISMISSHPEHIQKLKQLFVGDLSKPYTIGRLHQH
CCCCCCCEEEEEEEHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEHHHCCC
KGSLYLLRLNEVDTRDAAEAMQGLEAYIHRSDAAPLANDEYFLHDLVGLQVQTEAGEDIG
CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCEEECCCCHHHH
RAVEIIETGANDVLVVRKLGQADILVPMVRTVVRSIDIAGGTITVTSLADIVPE
HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA