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The map label for this gene is dppC [H]

Identifier: 159901113

GI number: 159901113

Start: 5884180

End: 5885217

Strand: Reverse

Name: dppC [H]

Synonym: Haur_4601

Alternate gene names: 159901113

Gene position: 5885217-5884180 (Counterclockwise)

Preceding gene: 159901114

Following gene: 159901112

Centisome position: 92.73

GC content: 50.67

Gene sequence:

>1038_bases
ATGTTTAAAAATCTGCCATTGACCTTTGGTTTAAGCATTGTTGGCTTGATGCTGCTAATTGCGATCTTCGGCCCAAGCCT
TGCTCCCCATGATCCAGTCGAGGAACATCGTGCTTTTCGCTATGAGGGCCAACTTTATGGCGGCCCACCGATGGCAGCCT
TGCCACCCTTCAGCCACCCCGAATATCCTTTGGGCTTCGATGATATTAGCCGCGACTTGCTCAGCCGTTTGTTATGGGCA
GTTCGGCCAACTTTAGTGCTCTGTACAATTATCGCGGCGGTGCGCTTACTGCTTGGTTTGGTGGTTGGCGGGGTGGTTGG
CTTTTTGGGGCCACGCGTGGCAAGTTGGTTGGATACAATTACCACCATCACCAGCTCCTTGCCAATTTTGATTGTAGCCT
TGGGTTATTTGATTTGGACTGGCGGCAGTGCCGTAATTGTCTATCAAGGGGTTAGGCCGATCACTGCCAATAATGCAGGT
TTAACGGCGTTTATTGTTGCTTTGTGTATGACTGGCTGGGTTAATAGCGCCAGCGTGGTGCAAGGCTATGTGCAAAAGAT
TTTGCATGCGCCCTATTTGGAAAGCGCTCAGGCAATTGGCTTGAATCGCTGGCAAATTACGCGGCGCTATATTTTGCCTC
AGGTTTGGCCGTTGCTACCAATGTTGCTTGCCAGCGAATTAACCGCCGTCACCTTGATTGTGGCTGAGCTTGGCTATTTG
GGCTATTACATCGGCGGCAGCTATATTTACACCGATAAAACCACCGACAGCCCTTTACCCGATATTGTCAAGCAAAAAGC
TGGTCAGCCTGAGCTTGGGCAGATGCTCTCAGACTTTTTTGGCCAATATAGCCGTGCGCCGTGGGTTTCTATTTTTGCTG
GGCTTTTGATGGTCTTGCTGTTGGTTGGTTTTACCCTGACCAGCGAAGGCTTGCGCCGCTCGTTGGATATTACACGGCCT
CGCCGCTGGAGTTGGCGCAACCTGTTACCACGCAAAACCAGCAAAACCAGTAAATCTAAGCTGAATCAAGCGGCCTAG

Upstream 100 bases:

>100_bases
CCATGACTGGCGCTATTTTGATTTTGGTCGATTTACTAGCCTCGATGCTGAGCTTATGGATCAACCCGCTTGGGCGGCAA
GCTAGTGTAGGGAGAGGCTA

Downstream 100 bases:

>100_bases
AGCTTTGCTATCGCCAATCATTTTTTCGTGTCGCTCACCTGTTCCACCTCAGCGCCGGAACGGGTACAATAGAGAGAGCA
ACATACTAAACATCACGGTT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MFKNLPLTFGLSIVGLMLLIAIFGPSLAPHDPVEEHRAFRYEGQLYGGPPMAALPPFSHPEYPLGFDDISRDLLSRLLWA
VRPTLVLCTIIAAVRLLLGLVVGGVVGFLGPRVASWLDTITTITSSLPILIVALGYLIWTGGSAVIVYQGVRPITANNAG
LTAFIVALCMTGWVNSASVVQGYVQKILHAPYLESAQAIGLNRWQITRRYILPQVWPLLPMLLASELTAVTLIVAELGYL
GYYIGGSYIYTDKTTDSPLPDIVKQKAGQPELGQMLSDFFGQYSRAPWVSIFAGLLMVLLLVGFTLTSEGLRRSLDITRP
RRWSWRNLLPRKTSKTSKSKLNQAA

Sequences:

>Translated_345_residues
MFKNLPLTFGLSIVGLMLLIAIFGPSLAPHDPVEEHRAFRYEGQLYGGPPMAALPPFSHPEYPLGFDDISRDLLSRLLWA
VRPTLVLCTIIAAVRLLLGLVVGGVVGFLGPRVASWLDTITTITSSLPILIVALGYLIWTGGSAVIVYQGVRPITANNAG
LTAFIVALCMTGWVNSASVVQGYVQKILHAPYLESAQAIGLNRWQITRRYILPQVWPLLPMLLASELTAVTLIVAELGYL
GYYIGGSYIYTDKTTDSPLPDIVKQKAGQPELGQMLSDFFGQYSRAPWVSIFAGLLMVLLLVGFTLTSEGLRRSLDITRP
RRWSWRNLLPRKTSKTSKSKLNQAA
>Mature_345_residues
MFKNLPLTFGLSIVGLMLLIAIFGPSLAPHDPVEEHRAFRYEGQLYGGPPMAALPPFSHPEYPLGFDDISRDLLSRLLWA
VRPTLVLCTIIAAVRLLLGLVVGGVVGFLGPRVASWLDTITTITSSLPILIVALGYLIWTGGSAVIVYQGVRPITANNAG
LTAFIVALCMTGWVNSASVVQGYVQKILHAPYLESAQAIGLNRWQITRRYILPQVWPLLPMLLASELTAVTLIVAELGYL
GYYIGGSYIYTDKTTDSPLPDIVKQKAGQPELGQMLSDFFGQYSRAPWVSIFAGLLMVLLLVGFTLTSEGLRRSLDITRP
RRWSWRNLLPRKTSKTSKSKLNQAA

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=319, Percent_Identity=26.3322884012539, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787054, Length=318, Percent_Identity=23.2704402515723, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1789964, Length=304, Percent_Identity=27.6315789473684, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37868; Mature: 37868

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKNLPLTFGLSIVGLMLLIAIFGPSLAPHDPVEEHRAFRYEGQLYGGPPMAALPPFSHP
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHEEECCEEECCCCCCCCCCCCCC
EYPLGFDDISRDLLSRLLWAVRPTLVLCTIIAAVRLLLGLVVGGVVGFLGPRVASWLDTI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TTITSSLPILIVALGYLIWTGGSAVIVYQGVRPITANNAGLTAFIVALCMTGWVNSASVV
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
QGYVQKILHAPYLESAQAIGLNRWQITRRYILPQVWPLLPMLLASELTAVTLIVAELGYL
HHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYYIGGSYIYTDKTTDSPLPDIVKQKAGQPELGQMLSDFFGQYSRAPWVSIFAGLLMVLL
HHHHCCEEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LVGFTLTSEGLRRSLDITRPRRWSWRNLLPRKTSKTSKSKLNQAA
HHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MFKNLPLTFGLSIVGLMLLIAIFGPSLAPHDPVEEHRAFRYEGQLYGGPPMAALPPFSHP
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHEEECCEEECCCCCCCCCCCCCC
EYPLGFDDISRDLLSRLLWAVRPTLVLCTIIAAVRLLLGLVVGGVVGFLGPRVASWLDTI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TTITSSLPILIVALGYLIWTGGSAVIVYQGVRPITANNAGLTAFIVALCMTGWVNSASVV
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
QGYVQKILHAPYLESAQAIGLNRWQITRRYILPQVWPLLPMLLASELTAVTLIVAELGYL
HHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYYIGGSYIYTDKTTDSPLPDIVKQKAGQPELGQMLSDFFGQYSRAPWVSIFAGLLMVLL
HHHHCCEEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LVGFTLTSEGLRRSLDITRPRRWSWRNLLPRKTSKTSKSKLNQAA
HHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377; 3145906 [H]