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The map label for this gene is paiB [H]

Identifier: 159901109

GI number: 159901109

Start: 5879688

End: 5880326

Strand: Reverse

Name: paiB [H]

Synonym: Haur_4597

Alternate gene names: 159901109

Gene position: 5880326-5879688 (Counterclockwise)

Preceding gene: 159901110

Following gene: 159901108

Centisome position: 92.65

GC content: 50.08

Gene sequence:

>639_bases
ATGTATATTCCCAACCATTTTGCCGAGCCAAATCCCGAGGTCTTGCACGAATTAATCCAACGCCAACCCTTGGCGACGAT
TATTACGCTTGGCGCTGAAGGCATTAATGCCAATCATATTCCGCTGTACCTCGACCCTCAAGCGGGCGAGTTTGGCACAC
TGTATGGCCATGTGGCACGAGCCAATCATATGTGGCAGGAGCATGATTCGCAACACGAAGTTTTGGCGATTTTCCATGGA
ACTGATAGCTATATTACGCCAAGTTGGTATGCTAGCAAAGCCCAAACTGGCAAAGTTGTACCAACTTGGAATTATGCTGT
GGCCCATGCCTATGGCCCTTTGCAGGTGATCGACGACCCACAATGGTTGCGCCAACAGCTTGAGCAGCTGACCAACCACA
ACGAAGCTAGTTTTGAGCATCAGTGGCAGGTTGCTGATGCGCCACACGACTATACCGAGGCTCTGCTCAAAGCAATTGTT
GGCATCGCTATTCCAGTTACTCGTTTGCTTGGCAAATGGAAAGTTAGCCAAAATCAGCCGCAGGCCAACCAACAAGGCGT
AATCGCAGGTTTAGCGGCTAGCTCAGAGCCAAATGCCGCCGCCATGATTGATCTGATCAAACAACGCCAATCGTCTTGA

Upstream 100 bases:

>100_bases
TACGAGCTGGCGATAGCTTTTCGTTATGGCAAAAACATGCCCATGGCTGGCTATTGCTGCGCGATGCCAATATGCTCCAA
ACATTGAAAGAGGCATAATT

Downstream 100 bases:

>100_bases
CAGCCCTGTATACTAGCCAATGTAAGATGCTGTGGATTGTTAGACCCTTCCTTGCAGCTACCCAGCAGCTCGATATGCTC
TTGTTGCCTTGACCCACTGC

Product: FMN-binding negative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MYIPNHFAEPNPEVLHELIQRQPLATIITLGAEGINANHIPLYLDPQAGEFGTLYGHVARANHMWQEHDSQHEVLAIFHG
TDSYITPSWYASKAQTGKVVPTWNYAVAHAYGPLQVIDDPQWLRQQLEQLTNHNEASFEHQWQVADAPHDYTEALLKAIV
GIAIPVTRLLGKWKVSQNQPQANQQGVIAGLAASSEPNAAAMIDLIKQRQSS

Sequences:

>Translated_212_residues
MYIPNHFAEPNPEVLHELIQRQPLATIITLGAEGINANHIPLYLDPQAGEFGTLYGHVARANHMWQEHDSQHEVLAIFHG
TDSYITPSWYASKAQTGKVVPTWNYAVAHAYGPLQVIDDPQWLRQQLEQLTNHNEASFEHQWQVADAPHDYTEALLKAIV
GIAIPVTRLLGKWKVSQNQPQANQQGVIAGLAASSEPNAAAMIDLIKQRQSS
>Mature_212_residues
MYIPNHFAEPNPEVLHELIQRQPLATIITLGAEGINANHIPLYLDPQAGEFGTLYGHVARANHMWQEHDSQHEVLAIFHG
TDSYITPSWYASKAQTGKVVPTWNYAVAHAYGPLQVIDDPQWLRQQLEQLTNHNEASFEHQWQVADAPHDYTEALLKAIV
GIAIPVTRLLGKWKVSQNQPQANQQGVIAGLAASSEPNAAAMIDLIKQRQSS

Specific function: Involved in the reduction of extracellular and cell- associated protease levels, as well as in the reduced levels of alpha-amylase, levansucrase, alkaline phosphatase and sporulation inhibition, when present in high copy number [H]

COG id: COG2808

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the paiB family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6322780, Length=155, Percent_Identity=33.5483870967742, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007396
- InterPro:   IPR012349
- InterPro:   IPR009002 [H]

Pfam domain/function: PF04299 FMN_bind_2 [H]

EC number: NA

Molecular weight: Translated: 23605; Mature: 23605

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIPNHFAEPNPEVLHELIQRQPLATIITLGAEGINANHIPLYLDPQAGEFGTLYGHVAR
CCCCCCCCCCCHHHHHHHHHCCCHHEEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHH
ANHMWQEHDSQHEVLAIFHGTDSYITPSWYASKAQTGKVVPTWNYAVAHAYGPLQVIDDP
HHHHHHHCCCCCEEEEEEECCCCCCCCCHHCCCCCCCCEEECCCHHEEECCCCEEEECCH
QWLRQQLEQLTNHNEASFEHQWQVADAPHDYTEALLKAIVGIAIPVTRLLGKWKVSQNQP
HHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
QANQQGVIAGLAASSEPNAAAMIDLIKQRQSS
CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MYIPNHFAEPNPEVLHELIQRQPLATIITLGAEGINANHIPLYLDPQAGEFGTLYGHVAR
CCCCCCCCCCCHHHHHHHHHCCCHHEEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHH
ANHMWQEHDSQHEVLAIFHGTDSYITPSWYASKAQTGKVVPTWNYAVAHAYGPLQVIDDP
HHHHHHHCCCCCEEEEEEECCCCCCCCCHHCCCCCCCCEEECCCHHEEECCCCEEEECCH
QWLRQQLEQLTNHNEASFEHQWQVADAPHDYTEALLKAIVGIAIPVTRLLGKWKVSQNQP
HHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
QANQQGVIAGLAASSEPNAAAMIDLIKQRQSS
CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2108124; 9384377 [H]