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The map label for this gene is prdB [H]

Identifier: 159900919

GI number: 159900919

Start: 5629193

End: 5629702

Strand: Reverse

Name: prdB [H]

Synonym: Haur_4406

Alternate gene names: 159900919

Gene position: 5629702-5629193 (Counterclockwise)

Preceding gene: 159900920

Following gene: 159900918

Centisome position: 88.7

GC content: 52.16

Gene sequence:

>510_bases
ATGCGGCGAACATTCAATCAACTTGGGGCGTGGTTGTATCGCGCAATGCCTGGGCTTGGCCAACGTTGGGCCAAACGCTT
TCAGGTGCAGGCGGTTGCAGCCCAAATTCCATGGACTCCGCTGCATGGCACGTTAGCTCAACAGCGAATCAGTTTAATTA
CCACTGGCGGCGTGCATCTACGCACCGATCCAGTGTTTGATATGCACGACCCGCACGGCGACCCCAATTTTCGTTTGATT
CCCGCCACCGCTAGCCCCAACGATTTGATGATTACCCACGATTATTATGATCATCGTGACGCTGATCGTGATATTAATAT
TGTCTTGCCGATCAGCCATTTTCAGCAACTCGCCGCCCGTGGCACAATTCAAAGCCTTGGGCCATGCTATAGTTTCATGG
GCCATATCACCGATGAACATATTGAGACATTAATCAAGCAAACTGCCCCAACCATTGCCCGCAATTTGCGCGAAGCTGGC
GTGACAGCAGCAGTGCTTACTCCGGCCTGA

Upstream 100 bases:

>100_bases
CCACAGCACCGATCGTTATGATTGGTGCTGTTTTTTATTGCCCAACATTCCTTAGCATGCTAAACTGCTTGAAGCAGGTT
TGATCATGGAGTTTTTGGCC

Downstream 100 bases:

>100_bases
GGCATCTGTAATCAGTCCGTGGGACTGATCGCACGAGTTTTAGAAGCGGCTGGGATTAGCACCGTCAGCTTTTTTCTGCT
GGCTGAAATTGCCCAACAGC

Product: hypothetical protein

Products: NA

Alternate protein names: D-proline reductase 26 kDa subunit [H]

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MRRTFNQLGAWLYRAMPGLGQRWAKRFQVQAVAAQIPWTPLHGTLAQQRISLITTGGVHLRTDPVFDMHDPHGDPNFRLI
PATASPNDLMITHDYYDHRDADRDINIVLPISHFQQLAARGTIQSLGPCYSFMGHITDEHIETLIKQTAPTIARNLREAG
VTAAVLTPA

Sequences:

>Translated_169_residues
MRRTFNQLGAWLYRAMPGLGQRWAKRFQVQAVAAQIPWTPLHGTLAQQRISLITTGGVHLRTDPVFDMHDPHGDPNFRLI
PATASPNDLMITHDYYDHRDADRDINIVLPISHFQQLAARGTIQSLGPCYSFMGHITDEHIETLIKQTAPTIARNLREAG
VTAAVLTPA
>Mature_169_residues
MRRTFNQLGAWLYRAMPGLGQRWAKRFQVQAVAAQIPWTPLHGTLAQQRISLITTGGVHLRTDPVFDMHDPHGDPNFRLI
PATASPNDLMITHDYYDHRDADRDINIVLPISHFQQLAARGTIQSLGPCYSFMGHITDEHIETLIKQTAPTIARNLREAG
VTAAVLTPA

Specific function: D-proline reductase catalyzes the reductive cleavage of a C-N bond in D-proline resulting in the formation of 5- aminovalerate. The alpha subunit has been shown to bind D-proline, presumably via the pyruvoyl group [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022787 [H]

Pfam domain/function: PF07355 GRDB [H]

EC number: =1.21.4.1 [H]

Molecular weight: Translated: 18913; Mature: 18913

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTFNQLGAWLYRAMPGLGQRWAKRFQVQAVAAQIPWTPLHGTLAQQRISLITTGGVHL
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCEEE
RTDPVFDMHDPHGDPNFRLIPATASPNDLMITHDYYDHRDADRDINIVLPISHFQQLAAR
ECCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHC
GTIQSLGPCYSFMGHITDEHIETLIKQTAPTIARNLREAGVTAAVLTPA
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
>Mature Secondary Structure
MRRTFNQLGAWLYRAMPGLGQRWAKRFQVQAVAAQIPWTPLHGTLAQQRISLITTGGVHL
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCEEE
RTDPVFDMHDPHGDPNFRLIPATASPNDLMITHDYYDHRDADRDINIVLPISHFQQLAAR
ECCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHC
GTIQSLGPCYSFMGHITDEHIETLIKQTAPTIARNLREAGVTAAVLTPA
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10085076 [H]