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The map label for this gene is pdtaR [H]

Identifier: 159900870

GI number: 159900870

Start: 5565358

End: 5565954

Strand: Reverse

Name: pdtaR [H]

Synonym: Haur_4357

Alternate gene names: 159900870

Gene position: 5565954-5565358 (Counterclockwise)

Preceding gene: 159900871

Following gene: 159900865

Centisome position: 87.7

GC content: 51.93

Gene sequence:

>597_bases
ATGTCTGATGAGCAGCGAGCCACAATTCGGATTTTGTTAGCCGAAGACAACGAGCTAGTGGCCTTGACCATGGAAGAATA
TTTGACCGATTTGGGCTTTCAGGTGGTGGGCGTTGCCCGCACCGGAACCCAAGCCTTGGAGTTGGCACGCCAATTAGAGC
CAGATATGGCGATTCTTGATGTTAAGTTGCCCGAATTGGAAGGCACCGAGGTTGCCGCACGGCTTTATGCTGAGCGCCCG
ATGCCAATTGTGATGGTAACCGCTTTTACCGACCGCGACACCATTCGCAAGGCTGAACGGGCTGGGGCACTGGGCTATTT
GGTCAAACCAGTCACGATGGAAGCATTAACCCCAGCGATTGATATTGCCTTAGCTCGCTTTGCCGAAATTCGTGCGTTGC
GCCAAGAAGTTGATGCTTTGCACGAATCGCTGGAAGCTCGCAAATTGATCGAGCGAGCCAAAGGGATTTTGATGCAGCGC
TTGAATATTAGCGAACACGATGCCTATGAACGGTTGCGCCATCGGGCACGCGAAAAACGGGTCAAGCTCAAAGATATTGC
CCAGACGATCATCGATGCTGAAGCTTTGCTCTCATAA

Upstream 100 bases:

>100_bases
CATATTTAGGTGTTTATTTGCCTGTTTATTCTCTGTGTAAATGCTTTTTAAAGTATGCTAGGATGTAGGCAGCCATTTCT
AGTGAAGACGGAGCCTTGTT

Downstream 100 bases:

>100_bases
TTGCCTCAGCAGCCTCGTTTGTTTGCTTTTGGTCTTTTTGGCTTATTGCCGAGCTAAACGAAGCGCCCTTGTTGGATTGC
CGACAAGAGCGCTTCAAGCT

Product: response regulator receiver/ANTAR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MSDEQRATIRILLAEDNELVALTMEEYLTDLGFQVVGVARTGTQALELARQLEPDMAILDVKLPELEGTEVAARLYAERP
MPIVMVTAFTDRDTIRKAERAGALGYLVKPVTMEALTPAIDIALARFAEIRALRQEVDALHESLEARKLIERAKGILMQR
LNISEHDAYERLRHRAREKRVKLKDIAQTIIDAEALLS

Sequences:

>Translated_198_residues
MSDEQRATIRILLAEDNELVALTMEEYLTDLGFQVVGVARTGTQALELARQLEPDMAILDVKLPELEGTEVAARLYAERP
MPIVMVTAFTDRDTIRKAERAGALGYLVKPVTMEALTPAIDIALARFAEIRALRQEVDALHESLEARKLIERAKGILMQR
LNISEHDAYERLRHRAREKRVKLKDIAQTIIDAEALLS
>Mature_197_residues
SDEQRATIRILLAEDNELVALTMEEYLTDLGFQVVGVARTGTQALELARQLEPDMAILDVKLPELEGTEVAARLYAERPM
PIVMVTAFTDRDTIRKAERAGALGYLVKPVTMEALTPAIDIALARFAEIRALRQEVDALHESLEARKLIERAKGILMQRL
NISEHDAYERLRHRAREKRVKLKDIAQTIIDAEALLS

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=139, Percent_Identity=26.6187050359712, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790437, Length=126, Percent_Identity=30.952380952381, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22301; Mature: 22170

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDEQRATIRILLAEDNELVALTMEEYLTDLGFQVVGVARTGTQALELARQLEPDMAILD
CCCCCCEEEEEEEECCCCEEEEEHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEEE
VKLPELEGTEVAARLYAERPMPIVMVTAFTDRDTIRKAERAGALGYLVKPVTMEALTPAI
EECCCCCCHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
DIALARFAEIRALRQEVDALHESLEARKLIERAKGILMQRLNISEHDAYERLRHRAREKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
VKLKDIAQTIIDAEALLS
CHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDEQRATIRILLAEDNELVALTMEEYLTDLGFQVVGVARTGTQALELARQLEPDMAILD
CCCCCEEEEEEEECCCCEEEEEHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEEE
VKLPELEGTEVAARLYAERPMPIVMVTAFTDRDTIRKAERAGALGYLVKPVTMEALTPAI
EECCCCCCHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
DIALARFAEIRALRQEVDALHESLEARKLIERAKGILMQRLNISEHDAYERLRHRAREKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
VKLKDIAQTIIDAEALLS
CHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]