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The map label for this gene is nudF [H]

Identifier: 159900803

GI number: 159900803

Start: 5478175

End: 5478897

Strand: Reverse

Name: nudF [H]

Synonym: Haur_4290

Alternate gene names: 159900803

Gene position: 5478897-5478175 (Counterclockwise)

Preceding gene: 159900810

Following gene: 159900802

Centisome position: 86.33

GC content: 49.65

Gene sequence:

>723_bases
ATGACAGAAACTGCTGAAAATTACGATGCGACAAAATATGAGCGGCCTTCTGTAACGGTCGATGTGGTGATATTTGGCTT
GCGCAGTGGCCGTTTGCATGTGCTGATGGTGCAGCGGAAACATTGGCCCTACGCTGAACATTGGGCGATTCCAGGTGGCT
TCGTCAACATGGATGAATCGTTGGAAATGGCTGCTCGGCGCGAGTTGGAGGAAGAAACAGGCGTTCACGATGTGTATATG
GAGCAGCTGTATACTTTTGGTGATCCTGGGCGCGACCCACGAACCCGCGTGATTAGTGTGGCCTATTTTGCCTTAATTCG
TACCGAAGAGCAAGCCTTGCAAGTTTCCGACGAATCGAATGATGTTTGTTGGTTTCCGGTCGATGAACTGCCCAAGGACT
TGGCCTTCGATCATGAAAAGATTCTGCGCTTTGCAATCGATCGCTTGCGCTCAAAGCTGGAATACACCACTTTGGCCTTT
CAATTGCTCCCCAAGGAATTTAGCTTGCCCAAACTCAAGCGGATTTACGAAGAGATATTGGGCGAGCAGCTCGATAAAGC
CAATTTCTATCGCAAACTGCGTGATTCCGATTTGCTCGAAGATACTGGCAAATTGCTGAATAGCCGAGGCCGACCAGCTC
GCCTCTATCGCTTCCGCGATTCACGCATCGAGGGCGATTTTGTGTTTCGCTACCGCGAAGCCAAAAAGAAGGACGAACAA
TAA

Upstream 100 bases:

>100_bases
AGATTCTGATTCCCTGACCTCTTGCCCCCAATACTCCCTATTGACAACTGCCCAATTCATGTTTATACTTTGTGTCATAA
TAACACTATTAGGAGCAGCT

Downstream 100 bases:

>100_bases
GGCAAACGTCAGAAATCAAAAGTCAAAATACTCGGAATAAGCTATTTTGCCTTTTGCCCTTTGCCTTCTAACTTTACTGG
GGGTGTTTATGTACACTTTA

Product: NUDIX hydrolase

Products: NA

Alternate protein names: ADP-ribose diphosphatase; ADP-ribose phosphohydrolase; Adenosine diphosphoribose pyrophosphatase; ADPR-PPase [H]

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MTETAENYDATKYERPSVTVDVVIFGLRSGRLHVLMVQRKHWPYAEHWAIPGGFVNMDESLEMAARRELEEETGVHDVYM
EQLYTFGDPGRDPRTRVISVAYFALIRTEEQALQVSDESNDVCWFPVDELPKDLAFDHEKILRFAIDRLRSKLEYTTLAF
QLLPKEFSLPKLKRIYEEILGEQLDKANFYRKLRDSDLLEDTGKLLNSRGRPARLYRFRDSRIEGDFVFRYREAKKKDEQ

Sequences:

>Translated_240_residues
MTETAENYDATKYERPSVTVDVVIFGLRSGRLHVLMVQRKHWPYAEHWAIPGGFVNMDESLEMAARRELEEETGVHDVYM
EQLYTFGDPGRDPRTRVISVAYFALIRTEEQALQVSDESNDVCWFPVDELPKDLAFDHEKILRFAIDRLRSKLEYTTLAF
QLLPKEFSLPKLKRIYEEILGEQLDKANFYRKLRDSDLLEDTGKLLNSRGRPARLYRFRDSRIEGDFVFRYREAKKKDEQ
>Mature_239_residues
TETAENYDATKYERPSVTVDVVIFGLRSGRLHVLMVQRKHWPYAEHWAIPGGFVNMDESLEMAARRELEEETGVHDVYME
QLYTFGDPGRDPRTRVISVAYFALIRTEEQALQVSDESNDVCWFPVDELPKDLAFDHEKILRFAIDRLRSKLEYTTLAFQ
LLPKEFSLPKLKRIYEEILGEQLDKANFYRKLRDSDLLEDTGKLLNSRGRPARLYRFRDSRIEGDFVFRYREAKKKDEQ

Specific function: Unknown

COG id: COG1051

COG function: function code F; ADP-ribose pyrophosphatase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020476
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: =3.6.1.13 [H]

Molecular weight: Translated: 28337; Mature: 28206

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETAENYDATKYERPSVTVDVVIFGLRSGRLHVLMVQRKHWPYAEHWAIPGGFVNMDES
CCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCHHHCCCCCCCCCCCHH
LEMAARRELEEETGVHDVYMEQLYTFGDPGRDPRTRVISVAYFALIRTEEQALQVSDESN
HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCC
DVCWFPVDELPKDLAFDHEKILRFAIDRLRSKLEYTTLAFQLLPKEFSLPKLKRIYEEIL
CEEEEEHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
GEQLDKANFYRKLRDSDLLEDTGKLLNSRGRPARLYRFRDSRIEGDFVFRYREAKKKDEQ
HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHEEEEHHHHCCCCC
>Mature Secondary Structure 
TETAENYDATKYERPSVTVDVVIFGLRSGRLHVLMVQRKHWPYAEHWAIPGGFVNMDES
CCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCHHHCCCCCCCCCCCHH
LEMAARRELEEETGVHDVYMEQLYTFGDPGRDPRTRVISVAYFALIRTEEQALQVSDESN
HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCC
DVCWFPVDELPKDLAFDHEKILRFAIDRLRSKLEYTTLAFQLLPKEFSLPKLKRIYEEIL
CEEEEEHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
GEQLDKANFYRKLRDSDLLEDTGKLLNSRGRPARLYRFRDSRIEGDFVFRYREAKKKDEQ
HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHEEEEHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087; 9694840 [H]