Click here to switch to the map view.

The map label for this gene is petB [H]

Identifier: 159900765

GI number: 159900765

Start: 5425281

End: 5426969

Strand: Reverse

Name: petB [H]

Synonym: Haur_4252

Alternate gene names: 159900765

Gene position: 5426969-5425281 (Counterclockwise)

Preceding gene: 159900766

Following gene: 159900764

Centisome position: 85.51

GC content: 50.09

Gene sequence:

>1689_bases
ATGGCTGTATCGCCTGAAAGCAAGCGCAAGGGCTTCGGTGGCTGGCTAACCGAGGTTGGTCGCTCATTCTTCCCTTCGAT
GGGGGCACGTGAGTGGCGCGAAACGCTCCGTGGTGAGCCAGCACCACGCCCAAACCCACGGATGCGGGTGCATTCAAATA
GTTTTTGGTACCACATTCGCCCACGTTCGTTATCTGAAGAAGCCACCGCATGGTATTACACTATGGGGCTTGGCTGGATG
TCGTTTTTCTTCTTTGTGCTTGAGGCGATTACTGGTCTCGTTTTGATGATCTATTATTCGCCATCGCCCAATGAAGCCTA
CGCCACTATGACTCAGATTATGAACGATGTGCCGTTGGGCGGCCTGATGCGGAATGTTCACCGCTTAGGGGCGCACTTTA
TGGTTGCAGTGGTGATTTTACACATGCTGCGAACCTACTTTACGGCCTCGTATAAAGCTCCGCGCCAGTTTATCTGGTTT
ACGGGGATGATCCTGCTCTTTATGACGCTGTTGTTGTCGTTCTCTGGCTATCTCTTGCCATGGGACCAATTGGCGTTCTG
GGCGGTGACGATTGGTTCGTCGATGGCCGATGCTGCACCTGGGGTTGGGCCGGCAATTGGCCGCTTGCTCCGTGGTGGCG
CTGAAATTGGCGCGGGCGCACTCTTGCGCTTCTATTTGCTGCACATCTTTATGTTGCCAATGCTGACGATTATTTTCATC
AGTATTCACTACTATGCAGTGCGCAAGCAAGAAATCTCGCCAATTCACGAATTGTTTGAAAACAAAAAACCAACCAAGCG
CAAAATCCCCTTCTTGCCAGATCAAGTGTTCTTTGAATTGGCCGTGATTGTGGTGTTGACCTTTGCCTTTATCTTTATCA
ACAACTTCTTCTGGGATGCCAAGCTGGAAAATCACGCCAACGCTTTGGAAACCCCTCAACACACCCAAGCACCATGGTAT
TTCTTCTGGTTGCAAGGGATGTTGAAGCTTGGTGATAAGATCGTTTGGGGCTTGGGCATCGCTGGGATCATCTTCGGCGC
ACTGTTCCTCTTGCCATACATCGACCGCAACCCTTCACGCCGCTTCAAAGATCGCAAATTTGCGCTTGCTGGCGGGATCG
TTTCGTTGATTGTCTTTATTGTGGTTTCGTATGGTGGCTTGCCCGCCTTCGGGATTCAAAAAGTCGGTTCGAACGAATTG
GCCGTGTCGTATGTACCGGTTGAAGGCGAAGGTCGAGTGATGGAAGTGCCATTCGACCAAGTGCCGCAAGAAAAATTTGT
CTATAAAGTCTATTACGATGCAACCAAAGATGCGTTTGTCGATGGTGAGTTTGGCGTAGCCGAAGGGCCATTGCCAGAAG
CACTCTCGCCCGTCTTCAAAGAAATGTTGCTCGAACTCAAGCACGATGTGCAAAAATGGGCTGAATATGATGTGTTGTTT
GTTCGCCCAACCGTAACCTTGACGATCGAGCCATGGCTCTATCAACAAGATACCGATGCTGCCGGATTCTCAACAGCAGT
CGATGGGATTCTGCAAAAACGTGTGACCTTGGATATGGAATGGACAACGGCGGGTTACGATGCCGAAGGTAATTTGGTTG
AAACCCCTGAAAAGAGCCGTTACACCCAATATAAATTCCTGAACCGCAATGGGGTTGTTCACGTTGGCGATACAGAACCA
CGAAACTAA

Upstream 100 bases:

>100_bases
TCCGGTTACTTTAGAAAATGGCGCATTGGTTGTAGACACTGGGAAAAAGAAGACGGGTCTAACTCACGGCTAGTTTACCC
AGTCACGAAGGAGTTTCCGT

Downstream 100 bases:

>100_bases
GTTTTTTATCCACGGCCTAAGTTTGTGCTTGGGCCGTGTCGAATAAGGAAACACGTCCTATGACGAAAAACATTGCAGTT
TCGCTGCTGTTTACCCTCGC

Product: cytochrome b/b6 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 562; Mature: 561

Protein sequence:

>562_residues
MAVSPESKRKGFGGWLTEVGRSFFPSMGAREWRETLRGEPAPRPNPRMRVHSNSFWYHIRPRSLSEEATAWYYTMGLGWM
SFFFFVLEAITGLVLMIYYSPSPNEAYATMTQIMNDVPLGGLMRNVHRLGAHFMVAVVILHMLRTYFTASYKAPRQFIWF
TGMILLFMTLLLSFSGYLLPWDQLAFWAVTIGSSMADAAPGVGPAIGRLLRGGAEIGAGALLRFYLLHIFMLPMLTIIFI
SIHYYAVRKQEISPIHELFENKKPTKRKIPFLPDQVFFELAVIVVLTFAFIFINNFFWDAKLENHANALETPQHTQAPWY
FFWLQGMLKLGDKIVWGLGIAGIIFGALFLLPYIDRNPSRRFKDRKFALAGGIVSLIVFIVVSYGGLPAFGIQKVGSNEL
AVSYVPVEGEGRVMEVPFDQVPQEKFVYKVYYDATKDAFVDGEFGVAEGPLPEALSPVFKEMLLELKHDVQKWAEYDVLF
VRPTVTLTIEPWLYQQDTDAAGFSTAVDGILQKRVTLDMEWTTAGYDAEGNLVETPEKSRYTQYKFLNRNGVVHVGDTEP
RN

Sequences:

>Translated_562_residues
MAVSPESKRKGFGGWLTEVGRSFFPSMGAREWRETLRGEPAPRPNPRMRVHSNSFWYHIRPRSLSEEATAWYYTMGLGWM
SFFFFVLEAITGLVLMIYYSPSPNEAYATMTQIMNDVPLGGLMRNVHRLGAHFMVAVVILHMLRTYFTASYKAPRQFIWF
TGMILLFMTLLLSFSGYLLPWDQLAFWAVTIGSSMADAAPGVGPAIGRLLRGGAEIGAGALLRFYLLHIFMLPMLTIIFI
SIHYYAVRKQEISPIHELFENKKPTKRKIPFLPDQVFFELAVIVVLTFAFIFINNFFWDAKLENHANALETPQHTQAPWY
FFWLQGMLKLGDKIVWGLGIAGIIFGALFLLPYIDRNPSRRFKDRKFALAGGIVSLIVFIVVSYGGLPAFGIQKVGSNEL
AVSYVPVEGEGRVMEVPFDQVPQEKFVYKVYYDATKDAFVDGEFGVAEGPLPEALSPVFKEMLLELKHDVQKWAEYDVLF
VRPTVTLTIEPWLYQQDTDAAGFSTAVDGILQKRVTLDMEWTTAGYDAEGNLVETPEKSRYTQYKFLNRNGVVHVGDTEP
RN
>Mature_561_residues
AVSPESKRKGFGGWLTEVGRSFFPSMGAREWRETLRGEPAPRPNPRMRVHSNSFWYHIRPRSLSEEATAWYYTMGLGWMS
FFFFVLEAITGLVLMIYYSPSPNEAYATMTQIMNDVPLGGLMRNVHRLGAHFMVAVVILHMLRTYFTASYKAPRQFIWFT
GMILLFMTLLLSFSGYLLPWDQLAFWAVTIGSSMADAAPGVGPAIGRLLRGGAEIGAGALLRFYLLHIFMLPMLTIIFIS
IHYYAVRKQEISPIHELFENKKPTKRKIPFLPDQVFFELAVIVVLTFAFIFINNFFWDAKLENHANALETPQHTQAPWYF
FWLQGMLKLGDKIVWGLGIAGIIFGALFLLPYIDRNPSRRFKDRKFALAGGIVSLIVFIVVSYGGLPAFGIQKVGSNELA
VSYVPVEGEGRVMEVPFDQVPQEKFVYKVYYDATKDAFVDGEFGVAEGPLPEALSPVFKEMLLELKHDVQKWAEYDVLFV
RPTVTLTIEPWLYQQDTDAAGFSTAVDGILQKRVTLDMEWTTAGYDAEGNLVETPEKSRYTQYKFLNRNGVVHVGDTEPR
N

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family. PetB subfamily [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=299, Percent_Identity=27.4247491638796, Blast_Score=101, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6226529, Length=303, Percent_Identity=25.7425742574257, Blast_Score=89, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6226532, Length=163, Percent_Identity=29.4478527607362, Blast_Score=85, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6226531, Length=129, Percent_Identity=31.7829457364341, Blast_Score=74, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 63868; Mature: 63737

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: PS51002 CYTB_NTER ; PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVSPESKRKGFGGWLTEVGRSFFPSMGAREWRETLRGEPAPRPNPRMRVHSNSFWYHIR
CCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEC
PRSLSEEATAWYYTMGLGWMSFFFFVLEAITGLVLMIYYSPSPNEAYATMTQIMNDVPLG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCHH
GLMRNVHRLGAHFMVAVVILHMLRTYFTASYKAPRQFIWFTGMILLFMTLLLSFSGYLLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
WDQLAFWAVTIGSSMADAAPGVGPAIGRLLRGGAEIGAGALLRFYLLHIFMLPMLTIIFI
HHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SIHYYAVRKQEISPIHELFENKKPTKRKIPFLPDQVFFELAVIVVLTFAFIFINNFFWDA
HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC
KLENHANALETPQHTQAPWYFFWLQGMLKLGDKIVWGLGIAGIIFGALFLLPYIDRNPSR
CHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH
RFKDRKFALAGGIVSLIVFIVVSYGGLPAFGIQKVGSNELAVSYVPVEGEGRVMEVPFDQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEEEECCCCCEEECCHHH
VPQEKFVYKVYYDATKDAFVDGEFGVAEGPLPEALSPVFKEMLLELKHDVQKWAEYDVLF
CCHHHEEEEEEECCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
VRPTVTLTIEPWLYQQDTDAAGFSTAVDGILQKRVTLDMEWTTAGYDAEGNLVETPEKSR
EECEEEEEECCEEEECCCCCCCHHHHHHHHHHHHHEEEEEEEECCCCCCCCEECCCCCCC
YTQYKFLNRNGVVHVGDTEPRN
CHHHEEECCCCEEECCCCCCCC
>Mature Secondary Structure 
AVSPESKRKGFGGWLTEVGRSFFPSMGAREWRETLRGEPAPRPNPRMRVHSNSFWYHIR
CCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEC
PRSLSEEATAWYYTMGLGWMSFFFFVLEAITGLVLMIYYSPSPNEAYATMTQIMNDVPLG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCHH
GLMRNVHRLGAHFMVAVVILHMLRTYFTASYKAPRQFIWFTGMILLFMTLLLSFSGYLLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
WDQLAFWAVTIGSSMADAAPGVGPAIGRLLRGGAEIGAGALLRFYLLHIFMLPMLTIIFI
HHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SIHYYAVRKQEISPIHELFENKKPTKRKIPFLPDQVFFELAVIVVLTFAFIFINNFFWDA
HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC
KLENHANALETPQHTQAPWYFFWLQGMLKLGDKIVWGLGIAGIIFGALFLLPYIDRNPSR
CHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH
RFKDRKFALAGGIVSLIVFIVVSYGGLPAFGIQKVGSNELAVSYVPVEGEGRVMEVPFDQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEEEECCCCCEEECCHHH
VPQEKFVYKVYYDATKDAFVDGEFGVAEGPLPEALSPVFKEMLLELKHDVQKWAEYDVLF
CCHHHEEEEEEECCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
VRPTVTLTIEPWLYQQDTDAAGFSTAVDGILQKRVTLDMEWTTAGYDAEGNLVETPEKSR
EECEEEEEECCEEEECCCCCCCHHHHHHHHHHHHHEEEEEEEECCCCCCCCEECCCCCCC
YTQYKFLNRNGVVHVGDTEPRN
CHHHEEECCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA