| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159900747
Identifier: 159900747
GI number: 159900747
Start: 5396099
End: 5398249
Strand: Reverse
Name: 159900747
Synonym: Haur_4234
Alternate gene names: NA
Gene position: 5398249-5396099 (Counterclockwise)
Preceding gene: 159900748
Following gene: 159900744
Centisome position: 85.06
GC content: 47.61
Gene sequence:
>2151_bases ATGGCGCGGAAACGGATCGTCGGAAACAGAATCGGATTTTATTTAATCTTAATTGGTATCCTGCTCAATTTGGGCACAGT CAAAGCCCAACAGCCCCAATCTCAGCCAAAGCGGCTGCTCAGCTCAGCGACAGACAGGGCTTTTGAACCAACAACCATCC AATCCTCGCCCTTAACCTTAACCAACAGCAGCGTGATTAGTGGCACCTGGGATACGAGCTTTGGCAATAGTTTAGCGACC GCTGGCACGATCACCAAGTTGCATCTTGATGCCAATAATCGTTTGTATGTCGCTGGTAAATTCAATTACCTCAATGGGCA ATTGTTTAATGGGCTAGCCGCATGGAATGGTACAACTTGGCAAGGCTATGGCTTGCAAGCCAATGATGTGGATACGATCA ATGCCCTCGATAGCTACCAAAACCAATTGGTGGTGGCTGGGCGTTTTCGCCAATTGGCGAACCAAACCACGAATGGCCTT GCCCGTTGGGATGGTAGCCAATTTCAAGCCTTTGGCACTGGCGTTAGTGGCATCAACGATTCATATCGCAACAATATTAT TTCGCAGGTCTATGATATTGAAGTCCTGAGTGATACGCTGTATCTCGGTGGCAACTTTGATACATTTAATGGCCTCGATG CCCACGGCACAGCCTACTGGCGACCGACCGGCTTTGGCGAGTTTGGCGATTTTAATGGCGTAATCAGCGATCTCGATGCA ATTCCCAATACGCTTTTTGCTGGTGGCAGTGTAAGCCGCGTCAATCAAACCTCAATTCAAGGTTTAGGCTTATGGAATGG CACAACCTGGCAAAACTCCAGCTTGCCAGGCTCAAATGCCGCCCGTGATCAAATAGGGCGAATTGGGACGACGCTCTATA CCTGGGCCAATAACTATGATCCGCGACAAACCATGATGTATCGCTGGAATGCTAATCAGTGGCAAGCGTTTGGCAGCTGG ATCGATGAATTTGTGCTTGGTGTGGCGCAAAGCAACGATTTATATGCCTATACTATCAGCGATCTATGGCGCTTAGTTGG CAACCAATGGCAATTGGTCAATCTGCCAATGACGATCAACTCTATTAATACAGTTGTTGGCAATGACAATGGGTTGTATC TCGCTGGTAATTTTGAAGTTGATGGCAACGCCGTGCAATTGGTGCATTGGAATGGTACAACGCTCACGCCACTTGCCAGC ACCAGCGTTTATCCACGGCTTGATGAAATAACCGGCGTTCAAGGTCTGCCAATTATCAAACCAAATTGGCCGAATGTGCT CAAGCAGTGGGATGGTCAAACCTGGCAAACAAGCTACGCATTACAGGGGATGGCTAGCCTTTTCGCCACCAGTGATGATC GTGCCTATTTGGCTTACCCTTATCCATATCAAACCGCTGGTTCATTGAGCAGTTCGCTGTGGCAATTTGATTCGACTGGC GCGTTGACTGCTCCCTTGCAATTGATTGGTCAGGCAACCACCTGGACGCTTTCAGGAACCGAGCTTTTGGCTAATGGCAT AACGATGATTAACAGCCAACCAATCAGTGGGGCCGTGGCGCTGAATGGCACTGAATGGCGTGAATTAGGGCTAAACACCA ATTTTCGCAAGATCTATTATGCCAATAATCGTATCTATGCGCTGATGATCACCCAAAACCATGATTGGTGGGAGATTGAT ATTGACACTTGGAATGGCACTGCTTGGGTTGATTTTACTGGGTTGTTTGTACAAAGCAATGGCTCGATTCCACAATTTGT AACCTGGCGCAATCAGCTGTATTTTACCAACGGCAATCAGTTGCATCGGCTCGAAAATACTGGCAATAGCATGGTATTTG AGTTTGATGGTGCGCCATTGCAACTTGCCAACATCAACGATCGCTATTTATATGTTGGCGGGGCATTTAGCAAAGTCGGT GAGCAACAGCTTGGTAGCATTGTGCGCTGGAATGGCAATAGCTGGCAAGCTCCAAGCCAAACGCCCAACGGCACAGTTGA ACACATGGCAATTACCGAAAACTATCTCTATTTGAGTGGTAATTTTACCCATATTGGCGCAAACCCAAGTTTAGGTGTGG CCAGCTTTCAGCTTGCCGCTGAACCTGAACCACTACCCTATCAATTGTTCATTCCCCAAGTTGTCAAATAA
Upstream 100 bases:
>100_bases AATTACGAGGCAAGGTAGTAGTCATAGTTGATATGTTATAGTCCAACTACACCTGGCTAGGAATAGCTAGTGGCATGCAG ATGCCTATTGGAGTTCAGCA
Downstream 100 bases:
>100_bases TTTTAGTTAGCGACCCACGCTGCTTGGTAACTCAAGTAGCGTGGGTGCTGTTTGGTCTAAGCTTGGTTAAGTTGCTGGCG AATCTGGGCTAAATACTTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 716; Mature: 715
Protein sequence:
>716_residues MARKRIVGNRIGFYLILIGILLNLGTVKAQQPQSQPKRLLSSATDRAFEPTTIQSSPLTLTNSSVISGTWDTSFGNSLAT AGTITKLHLDANNRLYVAGKFNYLNGQLFNGLAAWNGTTWQGYGLQANDVDTINALDSYQNQLVVAGRFRQLANQTTNGL ARWDGSQFQAFGTGVSGINDSYRNNIISQVYDIEVLSDTLYLGGNFDTFNGLDAHGTAYWRPTGFGEFGDFNGVISDLDA IPNTLFAGGSVSRVNQTSIQGLGLWNGTTWQNSSLPGSNAARDQIGRIGTTLYTWANNYDPRQTMMYRWNANQWQAFGSW IDEFVLGVAQSNDLYAYTISDLWRLVGNQWQLVNLPMTINSINTVVGNDNGLYLAGNFEVDGNAVQLVHWNGTTLTPLAS TSVYPRLDEITGVQGLPIIKPNWPNVLKQWDGQTWQTSYALQGMASLFATSDDRAYLAYPYPYQTAGSLSSSLWQFDSTG ALTAPLQLIGQATTWTLSGTELLANGITMINSQPISGAVALNGTEWRELGLNTNFRKIYYANNRIYALMITQNHDWWEID IDTWNGTAWVDFTGLFVQSNGSIPQFVTWRNQLYFTNGNQLHRLENTGNSMVFEFDGAPLQLANINDRYLYVGGAFSKVG EQQLGSIVRWNGNSWQAPSQTPNGTVEHMAITENYLYLSGNFTHIGANPSLGVASFQLAAEPEPLPYQLFIPQVVK
Sequences:
>Translated_716_residues MARKRIVGNRIGFYLILIGILLNLGTVKAQQPQSQPKRLLSSATDRAFEPTTIQSSPLTLTNSSVISGTWDTSFGNSLAT AGTITKLHLDANNRLYVAGKFNYLNGQLFNGLAAWNGTTWQGYGLQANDVDTINALDSYQNQLVVAGRFRQLANQTTNGL ARWDGSQFQAFGTGVSGINDSYRNNIISQVYDIEVLSDTLYLGGNFDTFNGLDAHGTAYWRPTGFGEFGDFNGVISDLDA IPNTLFAGGSVSRVNQTSIQGLGLWNGTTWQNSSLPGSNAARDQIGRIGTTLYTWANNYDPRQTMMYRWNANQWQAFGSW IDEFVLGVAQSNDLYAYTISDLWRLVGNQWQLVNLPMTINSINTVVGNDNGLYLAGNFEVDGNAVQLVHWNGTTLTPLAS TSVYPRLDEITGVQGLPIIKPNWPNVLKQWDGQTWQTSYALQGMASLFATSDDRAYLAYPYPYQTAGSLSSSLWQFDSTG ALTAPLQLIGQATTWTLSGTELLANGITMINSQPISGAVALNGTEWRELGLNTNFRKIYYANNRIYALMITQNHDWWEID IDTWNGTAWVDFTGLFVQSNGSIPQFVTWRNQLYFTNGNQLHRLENTGNSMVFEFDGAPLQLANINDRYLYVGGAFSKVG EQQLGSIVRWNGNSWQAPSQTPNGTVEHMAITENYLYLSGNFTHIGANPSLGVASFQLAAEPEPLPYQLFIPQVVK >Mature_715_residues ARKRIVGNRIGFYLILIGILLNLGTVKAQQPQSQPKRLLSSATDRAFEPTTIQSSPLTLTNSSVISGTWDTSFGNSLATA GTITKLHLDANNRLYVAGKFNYLNGQLFNGLAAWNGTTWQGYGLQANDVDTINALDSYQNQLVVAGRFRQLANQTTNGLA RWDGSQFQAFGTGVSGINDSYRNNIISQVYDIEVLSDTLYLGGNFDTFNGLDAHGTAYWRPTGFGEFGDFNGVISDLDAI PNTLFAGGSVSRVNQTSIQGLGLWNGTTWQNSSLPGSNAARDQIGRIGTTLYTWANNYDPRQTMMYRWNANQWQAFGSWI DEFVLGVAQSNDLYAYTISDLWRLVGNQWQLVNLPMTINSINTVVGNDNGLYLAGNFEVDGNAVQLVHWNGTTLTPLAST SVYPRLDEITGVQGLPIIKPNWPNVLKQWDGQTWQTSYALQGMASLFATSDDRAYLAYPYPYQTAGSLSSSLWQFDSTGA LTAPLQLIGQATTWTLSGTELLANGITMINSQPISGAVALNGTEWRELGLNTNFRKIYYANNRIYALMITQNHDWWEIDI DTWNGTAWVDFTGLFVQSNGSIPQFVTWRNQLYFTNGNQLHRLENTGNSMVFEFDGAPLQLANINDRYLYVGGAFSKVGE QQLGSIVRWNGNSWQAPSQTPNGTVEHMAITENYLYLSGNFTHIGANPSLGVASFQLAAEPEPLPYQLFIPQVVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79072; Mature: 78941
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARKRIVGNRIGFYLILIGILLNLGTVKAQQPQSQPKRLLSSATDRAFEPTTIQSSPLTL CCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCEEE TNSSVISGTWDTSFGNSLATAGTITKLHLDANNRLYVAGKFNYLNGQLFNGLAAWNGTTW ECCCEEECCCCCCCCCCEECCCEEEEEEECCCCEEEEEEEEEECCCHHHCCEEECCCCCE QGYGLQANDVDTINALDSYQNQLVVAGRFRQLANQTTNGLARWDGSQFQAFGTGVSGIND ECCCCCCCCCCHHHHHHHHCCCEEEEHHHHHHHHHCCCCCEECCCCCEEEEECCCCCCCH SYRNNIISQVYDIEVLSDTLYLGGNFDTFNGLDAHGTAYWRPTGFGEFGDFNGVISDLDA HHHHHHHHHHEEEEEEECEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHH IPNTLFAGGSVSRVNQTSIQGLGLWNGTTWQNSSLPGSNAARDQIGRIGTTLYTWANNYD CCCCEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCC PRQTMMYRWNANQWQAFGSWIDEFVLGVAQSNDLYAYTISDLWRLVGNQWQLVNLPMTIN CCCEEEEEECCCHHHHHHHHHHHHHHHEECCCCEEEEEHHHHHHHHCCCEEEEECCEEEC SINTVVGNDNGLYLAGNFEVDGNAVQLVHWNGTTLTPLASTSVYPRLDEITGVQGLPIIK CCEEEEECCCCEEEEEEEEECCCEEEEEEECCCEECCCCCCCCCCCHHHHCCCCCCCEEC PNWPNVLKQWDGQTWQTSYALQGMASLFATSDDRAYLAYPYPYQTAGSLSSSLWQFDSTG CCCHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHEECCCCC ALTAPLQLIGQATTWTLSGTELLANGITMINSQPISGAVALNGTEWRELGLNTNFRKIYY CEEHHHHHHCCCEEEEECCHHHHHCCEEEEECCCCCCEEEECCCCHHEECCCCCEEEEEE ANNRIYALMITQNHDWWEIDIDTWNGTAWVDFTGLFVQSNGSIPQFVTWRNQLYFTNGNQ ECCEEEEEEEECCCCEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEECCEEEEECCCE LHRLENTGNSMVFEFDGAPLQLANINDRYLYVGGAFSKVGEQQLGSIVRWNGNSWQAPSQ EEEEECCCCEEEEEECCCCEEEECCCCCEEEECCHHHHHHHHHHCCEEEECCCCCCCCCC TPNGTVEHMAITENYLYLSGNFTHIGANPSLGVASFQLAAEPEPLPYQLFIPQVVK CCCCCEEEEEEEEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCCEEEECHHHCC >Mature Secondary Structure ARKRIVGNRIGFYLILIGILLNLGTVKAQQPQSQPKRLLSSATDRAFEPTTIQSSPLTL CCCCHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCEEE TNSSVISGTWDTSFGNSLATAGTITKLHLDANNRLYVAGKFNYLNGQLFNGLAAWNGTTW ECCCEEECCCCCCCCCCEECCCEEEEEEECCCCEEEEEEEEEECCCHHHCCEEECCCCCE QGYGLQANDVDTINALDSYQNQLVVAGRFRQLANQTTNGLARWDGSQFQAFGTGVSGIND ECCCCCCCCCCHHHHHHHHCCCEEEEHHHHHHHHHCCCCCEECCCCCEEEEECCCCCCCH SYRNNIISQVYDIEVLSDTLYLGGNFDTFNGLDAHGTAYWRPTGFGEFGDFNGVISDLDA HHHHHHHHHHEEEEEEECEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHH IPNTLFAGGSVSRVNQTSIQGLGLWNGTTWQNSSLPGSNAARDQIGRIGTTLYTWANNYD CCCCEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCC PRQTMMYRWNANQWQAFGSWIDEFVLGVAQSNDLYAYTISDLWRLVGNQWQLVNLPMTIN CCCEEEEEECCCHHHHHHHHHHHHHHHEECCCCEEEEEHHHHHHHHCCCEEEEECCEEEC SINTVVGNDNGLYLAGNFEVDGNAVQLVHWNGTTLTPLASTSVYPRLDEITGVQGLPIIK CCEEEEECCCCEEEEEEEEECCCEEEEEEECCCEECCCCCCCCCCCHHHHCCCCCCCEEC PNWPNVLKQWDGQTWQTSYALQGMASLFATSDDRAYLAYPYPYQTAGSLSSSLWQFDSTG CCCHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHEECCCCC ALTAPLQLIGQATTWTLSGTELLANGITMINSQPISGAVALNGTEWRELGLNTNFRKIYY CEEHHHHHHCCCEEEEECCHHHHHCCEEEEECCCCCCEEEECCCCHHEECCCCCEEEEEE ANNRIYALMITQNHDWWEIDIDTWNGTAWVDFTGLFVQSNGSIPQFVTWRNQLYFTNGNQ ECCEEEEEEEECCCCEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEECCEEEEECCCE LHRLENTGNSMVFEFDGAPLQLANINDRYLYVGGAFSKVGEQQLGSIVRWNGNSWQAPSQ EEEEECCCCEEEEEECCCCEEEECCCCCEEEECCHHHHHHHHHHCCEEEECCCCCCCCCC TPNGTVEHMAITENYLYLSGNFTHIGANPSLGVASFQLAAEPEPLPYQLFIPQVVK CCCCCEEEEEEEEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCCEEEECHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA