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The map label for this gene is resD [H]

Identifier: 159900669

GI number: 159900669

Start: 5303284

End: 5303982

Strand: Direct

Name: resD [H]

Synonym: Haur_4156

Alternate gene names: 159900669

Gene position: 5303284-5303982 (Clockwise)

Preceding gene: 159900668

Following gene: 159900671

Centisome position: 83.56

GC content: 51.79

Gene sequence:

>699_bases
ATGCAACGTATTTTAATTGTTGATGATGAACCAAGTGTGGTTGATGTAGTGCGTTCGCGCTTCGAGCGCGAAGGCTTTGC
CGTGGGCGAAACTGGCTCAGGCGAAGATGCCTTGGTACGCTTGCGCAACGAAACCTATGATCTGTTAATTTTGGATATTG
GCCTGCCTGGGATCGATGGCTTTGGCGTGTTGCGCCAAATGCGAGCCGAGGGCTTTGAGCAACCAGTGATTATGTTAACT
GCACGTGCCGATGAGGTTGATCGAGTGGTCGGTTTGGAGCTGGGCGCTGATGATTACGTGGTCAAGCCATTTTCCCCGCG
TGAACTAGTGGCCAGAGTACGTGCATTGTTGCGGCGTACTGCTGAGGCTAGCCGTTTGCGCCAACAAATTGGTGATGCAG
CCCCAACCTCAAGTGGCTTACAGCTCGATAATGCTCGTCGCCGCGCTACCTTCCGTGATGTGCAACTCACCTTGCGGCCC
AAAGAATTCGATTTATTGGCCTACTTGGCTTCGCACCCAGGCCAAGTGTTTACCCGCGAAGTGCTACTAGGGCAAGTTTG
GGGCTATGATGAATATGTTGATGCCCGCACCGTCGATGTACATATTCGGCGTTTGCGCTCAAAATTAAGCGAGATCGATG
CTGAATCGAATTTGATTCAGACTGAGTGGGGCATTGGCTATCGCTTTATCGAGGGTTAG

Upstream 100 bases:

>100_bases
CCTATTCGCTACCCGAAATTATTGCTTTGCCAATTGTTGATGGCTCACAACGCTTTTTAAACTGGATTTTGAGCGAAGTC
ATGACCAATGAGGATGCCTA

Downstream 100 bases:

>100_bases
AAATAAGCCATGGTTCATCCCCAGCCACTGCTCCTATCGCTCTGGGAGAAGGGCTGGGGATACAAAAATCGTCAATTGCG
GAATGCCCAAACTCACTCAA

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFGVLRQMRAEGFEQPVIMLT
ARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAEASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRP
KEFDLLAYLASHPGQVFTREVLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIEG

Sequences:

>Translated_232_residues
MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFGVLRQMRAEGFEQPVIMLT
ARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAEASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRP
KEFDLLAYLASHPGQVFTREVLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIEG
>Mature_232_residues
MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFGVLRQMRAEGFEQPVIMLT
ARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAEASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRP
KEFDLLAYLASHPGQVFTREVLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIEG

Specific function: Member of the two-component regulatory system ResD/ResE. Required for the expression of resA, ctaA, qcrABC and fnr; activation role in global regulation of aerobic and anaerobic respiration [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788394, Length=229, Percent_Identity=43.2314410480349, Blast_Score=177, Evalue=5e-46,
Organism=Escherichia coli, GI1786599, Length=230, Percent_Identity=42.1739130434783, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI1790860, Length=229, Percent_Identity=41.9213973799127, Blast_Score=161, Evalue=3e-41,
Organism=Escherichia coli, GI1789809, Length=228, Percent_Identity=37.719298245614, Blast_Score=157, Evalue=4e-40,
Organism=Escherichia coli, GI1789402, Length=229, Percent_Identity=38.4279475982533, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI87082012, Length=228, Percent_Identity=39.0350877192982, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1786784, Length=227, Percent_Identity=38.7665198237885, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1787229, Length=228, Percent_Identity=39.4736842105263, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI2367329, Length=234, Percent_Identity=40.5982905982906, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1790863, Length=230, Percent_Identity=36.0869565217391, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1786911, Length=230, Percent_Identity=36.5217391304348, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1790552, Length=228, Percent_Identity=34.6491228070175, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787375, Length=227, Percent_Identity=31.7180616740088, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI145693140, Length=235, Percent_Identity=30.6382978723404, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1788550, Length=136, Percent_Identity=35.2941176470588, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788191, Length=120, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788713, Length=153, Percent_Identity=30.0653594771242, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790299, Length=130, Percent_Identity=33.0769230769231, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790437, Length=117, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787487, Length=102, Percent_Identity=34.3137254901961, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26186; Mature: 26186

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDG
CCEEEEECCCCHHHHHHHHHHHHCCCEECCCCCCHHHEEEECCCCEEEEEEEECCCCCCH
FGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRT
HHHHHHHHHCCCCCCEEEEEECCCHHHHHHEEEECCCCEEECCCCHHHHHHHHHHHHHHH
AEASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTRE
HHHHHHHHHHCCCCCCCCCCEECCHHHHCEEEEEEEEECCCHHHHHHHHHCCCCHHHHHH
VLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIEG
HHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEECC
>Mature Secondary Structure
MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDG
CCEEEEECCCCHHHHHHHHHHHHCCCEECCCCCCHHHEEEECCCCEEEEEEEECCCCCCH
FGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRT
HHHHHHHHHCCCCCCEEEEEECCCHHHHHHEEEECCCCEEECCCCHHHHHHHHHHHHHHH
AEASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTRE
HHHHHHHHHHCCCCCCCCCCEECCHHHHCEEEEEEEEECCCHHHHHHHHHCCCCHHHHHH
VLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIEG
HHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934829; 9384377; 8631715; 8682783 [H]