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The map label for this gene is cyc2 [H]

Identifier: 159900662

GI number: 159900662

Start: 5296683

End: 5297627

Strand: Reverse

Name: cyc2 [H]

Synonym: Haur_4149

Alternate gene names: 159900662

Gene position: 5297627-5296683 (Counterclockwise)

Preceding gene: 159900663

Following gene: 159900661

Centisome position: 83.47

GC content: 48.99

Gene sequence:

>945_bases
GTGTTTGTGAATATTCAATTACCTTTTACGTCGAAACTTAACCCTCACCTAGAAGCAGTCTATGCTGAACACAGCCAATG
GTTGAGTCAATCGCCCCATAGCGCTAAAAGTCAATGGGGGTTTTATCAGCGTTTGCGTTTGCCACAGCTCTTGGCGCGGG
TTTATCCACATGCCTGCAGTGAGCGTTTGCGTTTGATTCTCGATTGGGGTGGCTGGCTGTTTTTTCAAGATCAATGGTTT
CGTTCGTTGGCTGGGCAGCCCGAATTGGTCGCTAGCCTGGCCAATGACCTGATTAATGTTTTTAATGGAGCAACCCCGTT
GTATCCCCAAAAACCGTTGGTGGTGATGTTTGCCGATTGGAGCCAACGCATGGCTGGCCTGACATCGAACCAATGGCGTG
AGCGTTTTGGCCAAATGTTGAGCACCTATCTCCACGATTGGGTTTACGATGTGTATTGCAATGCCTACCAACCCACAATC
AACAACCAACTAGCGGTTGAACTTCACCAACGCATCGGTGCGGCCACGAGTTCGCTCGATTTTGTCGATTTTGCCCAGGC
TGAATTATTGCCTCCCTCGGTCAAGCAAGATCCAACTTTTCAAAGTTTGAGCGAAATCACCAACAATGTGGTGTGTTGGA
TGCACGATATTGCCTCATTAGAGCGTGATCTAACGCTTGCCGAACCTCAAAATATTGCTGTGTTGGTCAAGCAGCGTGAG
CATTGCACTTGGAGTCGGGCGATCGAGCGGGTTGAGCAAATGTGCTATGGCGAGGTAGCAGCCTTTGAGCGAATTGTGGC
TGAACGCCCGCATTATGGCGAATTTGAGCTGGTGGTCAGCGATTACATCGAAAACCTACGGGCTTGGATGCAAGGCACCA
TTGATTGGCTGCGGCTTGATTTAGTGGTAGCTAATGAGCCAGCAAATCGTTTAATTGCTGCTTAA

Upstream 100 bases:

>100_bases
TGTCATGGGGTTGGGTTAGGAATAAGGCACTATAGGTAATAGTAAGAAATCTCCGCATAATAATTTTAATGTTTTTTTGA
TCACTCGCGGAGGTGAAGTG

Downstream 100 bases:

>100_bases
GCACGATGATTTAGGCATTGGTTTACGTTATCCTCACTCAGCATACGGCTAGCTTAGTGAGGGTGATGTATGCGCGTCGA
ACAGTATTTTTCGGTTGATC

Product: hypothetical protein

Products: NA

Alternate protein names: Sesquiterpene cyclase; Sesquiterpene synthase [H]

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MFVNIQLPFTSKLNPHLEAVYAEHSQWLSQSPHSAKSQWGFYQRLRLPQLLARVYPHACSERLRLILDWGGWLFFQDQWF
RSLAGQPELVASLANDLINVFNGATPLYPQKPLVVMFADWSQRMAGLTSNQWRERFGQMLSTYLHDWVYDVYCNAYQPTI
NNQLAVELHQRIGAATSSLDFVDFAQAELLPPSVKQDPTFQSLSEITNNVVCWMHDIASLERDLTLAEPQNIAVLVKQRE
HCTWSRAIERVEQMCYGEVAAFERIVAERPHYGEFELVVSDYIENLRAWMQGTIDWLRLDLVVANEPANRLIAA

Sequences:

>Translated_314_residues
MFVNIQLPFTSKLNPHLEAVYAEHSQWLSQSPHSAKSQWGFYQRLRLPQLLARVYPHACSERLRLILDWGGWLFFQDQWF
RSLAGQPELVASLANDLINVFNGATPLYPQKPLVVMFADWSQRMAGLTSNQWRERFGQMLSTYLHDWVYDVYCNAYQPTI
NNQLAVELHQRIGAATSSLDFVDFAQAELLPPSVKQDPTFQSLSEITNNVVCWMHDIASLERDLTLAEPQNIAVLVKQRE
HCTWSRAIERVEQMCYGEVAAFERIVAERPHYGEFELVVSDYIENLRAWMQGTIDWLRLDLVVANEPANRLIAA
>Mature_314_residues
MFVNIQLPFTSKLNPHLEAVYAEHSQWLSQSPHSAKSQWGFYQRLRLPQLLARVYPHACSERLRLILDWGGWLFFQDQWF
RSLAGQPELVASLANDLINVFNGATPLYPQKPLVVMFADWSQRMAGLTSNQWRERFGQMLSTYLHDWVYDVYCNAYQPTI
NNQLAVELHQRIGAATSSLDFVDFAQAELLPPSVKQDPTFQSLSEITNNVVCWMHDIASLERDLTLAEPQNIAVLVKQRE
HCTWSRAIERVEQMCYGEVAAFERIVAERPHYGEFELVVSDYIENLRAWMQGTIDWLRLDLVVANEPANRLIAA

Specific function: Catalyzes the cyclization of farnesyl diphosphate (FPP) to a 85:15 mixture of the sesquiterpene alcohol germacradienol and the sesquiterpene hydrocarbon germacrene D. Seems also to be able to partially convert the germacradienol formed into geosmin, the c

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the terpene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005630
- InterPro:   IPR008949 [H]

Pfam domain/function: PF03936 Terpene_synth_C [H]

EC number: =4.2.3.22 [H]

Molecular weight: Translated: 36272; Mature: 36272

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVNIQLPFTSKLNPHLEAVYAEHSQWLSQSPHSAKSQWGFYQRLRLPQLLARVYPHACS
CEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ERLRLILDWGGWLFFQDQWFRSLAGQPELVASLANDLINVFNGATPLYPQKPLVVMFADW
HHHEEEHCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECH
SQRMAGLTSNQWRERFGQMLSTYLHDWVYDVYCNAYQPTINNQLAVELHQRIGAATSSLD
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC
FVDFAQAELLPPSVKQDPTFQSLSEITNNVVCWMHDIASLERDLTLAEPQNIAVLVKQRE
HHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCHH
HCTWSRAIERVEQMCYGEVAAFERIVAERPHYGEFELVVSDYIENLRAWMQGTIDWLRLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEE
LVVANEPANRLIAA
EEEECCCHHHHCCC
>Mature Secondary Structure
MFVNIQLPFTSKLNPHLEAVYAEHSQWLSQSPHSAKSQWGFYQRLRLPQLLARVYPHACS
CEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ERLRLILDWGGWLFFQDQWFRSLAGQPELVASLANDLINVFNGATPLYPQKPLVVMFADW
HHHEEEHCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECH
SQRMAGLTSNQWRERFGQMLSTYLHDWVYDVYCNAYQPTINNQLAVELHQRIGAATSSLD
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC
FVDFAQAELLPPSVKQDPTFQSLSEITNNVVCWMHDIASLERDLTLAEPQNIAVLVKQRE
HHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCHH
HCTWSRAIERVEQMCYGEVAAFERIVAERPHYGEFELVVSDYIENLRAWMQGTIDWLRLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEE
LVVANEPANRLIAA
EEEECCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]