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The map label for this gene is yhcZ [H]

Identifier: 159900604

GI number: 159900604

Start: 5223933

End: 5224508

Strand: Direct

Name: yhcZ [H]

Synonym: Haur_4091

Alternate gene names: 159900604

Gene position: 5223933-5224508 (Clockwise)

Preceding gene: 159900603

Following gene: 159900607

Centisome position: 82.31

GC content: 51.56

Gene sequence:

>576_bases
ATGTTGATTGGCGGAACGACGCTGACTCGCGCGGGTATGCGCAGTGTGTTGGCCGAGTACGAGGCCGAAATTGTGGCAGC
AGCCTCAAGCATCGAGCCATTAATCGAACAATTGGGAGTTGTCGATGTAGTGATTTTGCTCGATGATCAAGCGCTGCCCT
TGCTTTTGCAGCAAACCAACGATCAACCTGCGATTTTACTGATTAGCCAAGAATTACCACACCCCATGCCACAGCAACGG
GCATGGGGTGTGGTTTCAACCGATGCTTACCCTCAAGAAATTTGGGCCAGTTTGCAAGCGCTCCAGCTTGGTTTATGTGT
GCTATCGCCAAGTATTTTGGCCCAAATTCACAGCCCACCCCAGCCAGAACCCTTGGATAATCAACTGAGCGAGCGTGAAC
ATGAAGTGCTGCAACTGCTAGCCGAGGGCTTGACCAATCGCCAAATCGCCCAGCGCTTAATCATCAGCGAGCATACCGTG
AAATTTCATGTTTCAGCGTTGCTCGGCAAGTTGGATGTTAGCTCGCGGACTGAAGCGATTCGGGTTGGCGCTCAACGCGG
CTTAATTATTTGGTAG

Upstream 100 bases:

>100_bases
CAAGACTGTAACGCTTGATGTGCTACGAGCTGGCCAATTGCAAAACCTGAGCATCACAATTGGAGCAAAATAGCCCTTGA
GCGAAGCAGGATTAAAACTC

Downstream 100 bases:

>100_bases
CAAGGCCCAGCGTTTCAGTTAATCTGGCCCATTGCTCCAAGGTCAGCACCTCGGCTCGCAAATTAGGGTCAATTTCGGCC
TGAACAATTGCCGCCAGCAC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MLIGGTTLTRAGMRSVLAEYEAEIVAAASSIEPLIEQLGVVDVVILLDDQALPLLLQQTNDQPAILLISQELPHPMPQQR
AWGVVSTDAYPQEIWASLQALQLGLCVLSPSILAQIHSPPQPEPLDNQLSEREHEVLQLLAEGLTNRQIAQRLIISEHTV
KFHVSALLGKLDVSSRTEAIRVGAQRGLIIW

Sequences:

>Translated_191_residues
MLIGGTTLTRAGMRSVLAEYEAEIVAAASSIEPLIEQLGVVDVVILLDDQALPLLLQQTNDQPAILLISQELPHPMPQQR
AWGVVSTDAYPQEIWASLQALQLGLCVLSPSILAQIHSPPQPEPLDNQLSEREHEVLQLLAEGLTNRQIAQRLIISEHTV
KFHVSALLGKLDVSSRTEAIRVGAQRGLIIW
>Mature_191_residues
MLIGGTTLTRAGMRSVLAEYEAEIVAAASSIEPLIEQLGVVDVVILLDDQALPLLLQQTNDQPAILLISQELPHPMPQQR
AWGVVSTDAYPQEIWASLQALQLGLCVLSPSILAQIHSPPQPEPLDNQLSEREHEVLQLLAEGLTNRQIAQRLIISEHTV
KFHVSALLGKLDVSSRTEAIRVGAQRGLIIW

Specific function: Member of the two-component regulatory system yhcY/yhcZ [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 20907; Mature: 20907

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIGGTTLTRAGMRSVLAEYEAEIVAAASSIEPLIEQLGVVDVVILLDDQALPLLLQQTN
CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECCCCCHHHHCCCC
DQPAILLISQELPHPMPQQRAWGVVSTDAYPQEIWASLQALQLGLCVLSPSILAQIHSPP
CCCEEEEEECCCCCCCCCHHCCCCEECCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCCC
QPEPLDNQLSEREHEVLQLLAEGLTNRQIAQRLIISEHTVKFHVSALLGKLDVSSRTEAI
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
RVGAQRGLIIW
HHHCCCCCEEC
>Mature Secondary Structure
MLIGGTTLTRAGMRSVLAEYEAEIVAAASSIEPLIEQLGVVDVVILLDDQALPLLLQQTN
CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECCCCCHHHHCCCC
DQPAILLISQELPHPMPQQRAWGVVSTDAYPQEIWASLQALQLGLCVLSPSILAQIHSPP
CCCEEEEEECCCCCCCCCHHCCCCEECCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCCC
QPEPLDNQLSEREHEVLQLLAEGLTNRQIAQRLIISEHTVKFHVSALLGKLDVSSRTEAI
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
RVGAQRGLIIW
HHHCCCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]