Click here to switch to the map view.

The map label for this gene is 159900597

Identifier: 159900597

GI number: 159900597

Start: 5217358

End: 5218746

Strand: Reverse

Name: 159900597

Synonym: Haur_4084

Alternate gene names: NA

Gene position: 5218746-5217358 (Counterclockwise)

Preceding gene: 159900601

Following gene: 159900596

Centisome position: 82.23

GC content: 49.17

Gene sequence:

>1389_bases
ATGCTTCGAGTGAAGATTTTACTACTTGCAATTATTTTTCTGCCAATTCAATCAATCAATCAGGTAAACGCCCAAAAAAT
AGCTGAAATTTCACGAAATACCACAAATGAGCAACTTGATAGTGATAGCGATAGTTTGACCAATAGCTGGGAAACCAACC
ATCAACTTAATCCCTATAGCGCACTTGGCGACGATGGCGCGGCGGGCGACCCTGATCACGATGGCTTGAGTAATGCCAAT
GAGCAAATTCACGCGACCAATCCGCGTAACCCTGATAGCGATGCTGATGGGCTGAATGATGGCTGGGAAGTGCGCTATTG
GCTGAATCCAACCAGCGCAATCGGCGATCATGGAGCCACTGGCGATGCTGATCGCGATGGCTTGACCAATCAAGAGGAAT
TATTTAGTAATACTTACCCGAACAATCCTGATACAGATGGCGATGGGTTACGTGATGGCTGGGAAGTTGATCATCAATTT
TCGCCGATTAATACCACTGGTTATCACGGCAGCGCAGGCGATGTTGATACTGATAATCTGAATAATTTTCAAGAGCAAGC
AGCAGATACTAACCCCCGTCACCCCGATAGCGATGGCGATGGCTTGCCCGATGGCTTGGAAATTGAGCATGGTTCGAATC
CCTTAGATTGTGATTTGGATGCTGACGCAGATGGTTTGGAGAATCAGCCAGAACTGGCTTTGGCAACCAATCCATTTAAT
TCTGATAGTGATGGTGATGGTTTGCCCGATGGCTGGGAAGTGGCGCAGCAGCTCAATCCCTTGAGTGTTGCTGGCATTCA
TGGAGCCAATGGCGATGGCGATGCAGATGGTTTGGGCCAATTGCAAGAATATCTGCATCAAACCAACCCACATCAGGCCG
ATAGTGATGACGATGGCTTACTCGATGGTTGGGAAGTGCAGCATCATTTGAACCCGCTCAGTAGTTTGGCCGCTGATGGA
GCCAACGCCGACCCCGATAGCGATTCGCTGAGTAACCTTGCCGAACAAGGCTTTGCCACCAACCCACGCAACGCCGATAG
TGATAATGATCAATTGCCCGATGCTTGGGAATTGCAACAGCAACTTGATCCGTTGCTGGCAAGTGGCGAAGTTGGCACAC
ATGGCGATCCTGATGCTGATCGATTAACCAATCTAGCTGAATATCGCAATAGCACCCGACCGTTGCTGGCGGATAGCGAC
GGCGATGGCTTAGACGATGGTTGGGAAGTGCAGTATACGCTTGATCCACTTGATGGATTTGGGGTAAACGGAGCCAATGG
CGACCCTGATAGCGATGGCATGAATAATTTGATTGAATTGCAACGCCAAACCCACCCGTTGCAGGCCACGTACCTCGTTA
TGCTGCCACTCGCTCAACATTCCTACTAA

Upstream 100 bases:

>100_bases
GAGAGAATAAAGTACTAGCAAATTAATTGTATATCATTCTTGATCAGCGCATAATTCCTTCGGATTATTAATTTCTGTTC
TTTTTTGAAGGATTATGCCC

Downstream 100 bases:

>100_bases
CCCGCTTGATGCTGAGGCACACTATGGCTGTAGGCCTAGCGAAATTGCTAGGTTTATCGCCATTTAAACTTGGTATAATG
GCCCAACAACGTTGTTTGAG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: Thrombospondin Type 3 Repeat-Containing Protein; Polymorphic Outer Membrane Protein; AAA ATPase; Ig Domain-Containing Protein

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MLRVKILLLAIIFLPIQSINQVNAQKIAEISRNTTNEQLDSDSDSLTNSWETNHQLNPYSALGDDGAAGDPDHDGLSNAN
EQIHATNPRNPDSDADGLNDGWEVRYWLNPTSAIGDHGATGDADRDGLTNQEELFSNTYPNNPDTDGDGLRDGWEVDHQF
SPINTTGYHGSAGDVDTDNLNNFQEQAADTNPRHPDSDGDGLPDGLEIEHGSNPLDCDLDADADGLENQPELALATNPFN
SDSDGDGLPDGWEVAQQLNPLSVAGIHGANGDGDADGLGQLQEYLHQTNPHQADSDDDGLLDGWEVQHHLNPLSSLAADG
ANADPDSDSLSNLAEQGFATNPRNADSDNDQLPDAWELQQQLDPLLASGEVGTHGDPDADRLTNLAEYRNSTRPLLADSD
GDGLDDGWEVQYTLDPLDGFGVNGANGDPDSDGMNNLIELQRQTHPLQATYLVMLPLAQHSY

Sequences:

>Translated_462_residues
MLRVKILLLAIIFLPIQSINQVNAQKIAEISRNTTNEQLDSDSDSLTNSWETNHQLNPYSALGDDGAAGDPDHDGLSNAN
EQIHATNPRNPDSDADGLNDGWEVRYWLNPTSAIGDHGATGDADRDGLTNQEELFSNTYPNNPDTDGDGLRDGWEVDHQF
SPINTTGYHGSAGDVDTDNLNNFQEQAADTNPRHPDSDGDGLPDGLEIEHGSNPLDCDLDADADGLENQPELALATNPFN
SDSDGDGLPDGWEVAQQLNPLSVAGIHGANGDGDADGLGQLQEYLHQTNPHQADSDDDGLLDGWEVQHHLNPLSSLAADG
ANADPDSDSLSNLAEQGFATNPRNADSDNDQLPDAWELQQQLDPLLASGEVGTHGDPDADRLTNLAEYRNSTRPLLADSD
GDGLDDGWEVQYTLDPLDGFGVNGANGDPDSDGMNNLIELQRQTHPLQATYLVMLPLAQHSY
>Mature_462_residues
MLRVKILLLAIIFLPIQSINQVNAQKIAEISRNTTNEQLDSDSDSLTNSWETNHQLNPYSALGDDGAAGDPDHDGLSNAN
EQIHATNPRNPDSDADGLNDGWEVRYWLNPTSAIGDHGATGDADRDGLTNQEELFSNTYPNNPDTDGDGLRDGWEVDHQF
SPINTTGYHGSAGDVDTDNLNNFQEQAADTNPRHPDSDGDGLPDGLEIEHGSNPLDCDLDADADGLENQPELALATNPFN
SDSDGDGLPDGWEVAQQLNPLSVAGIHGANGDGDADGLGQLQEYLHQTNPHQADSDDDGLLDGWEVQHHLNPLSSLAADG
ANADPDSDSLSNLAEQGFATNPRNADSDNDQLPDAWELQQQLDPLLASGEVGTHGDPDADRLTNLAEYRNSTRPLLADSD
GDGLDDGWEVQYTLDPLDGFGVNGANGDPDSDGMNNLIELQRQTHPLQATYLVMLPLAQHSY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49626; Mature: 49626

Theoretical pI: Translated: 3.65; Mature: 3.65

Prosite motif: PS00018 EF_HAND_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRVKILLLAIIFLPIQSINQVNAQKIAEISRNTTNEQLDSDSDSLTNSWETNHQLNPYS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHCCCCCCCCCCCHH
ALGDDGAAGDPDHDGLSNANEQIHATNPRNPDSDADGLNDGWEVRYWLNPTSAIGDHGAT
HCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCHHHCCCCCCC
GDADRDGLTNQEELFSNTYPNNPDTDGDGLRDGWEVDHQFSPINTTGYHGSAGDVDTDNL
CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
NNFQEQAADTNPRHPDSDGDGLPDGLEIEHGSNPLDCDLDADADGLENQPELALATNPFN
HHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
SDSDGDGLPDGWEVAQQLNPLSVAGIHGANGDGDADGLGQLQEYLHQTNPHQADSDDDGL
CCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
LDGWEVQHHLNPLSSLAADGANADPDSDSLSNLAEQGFATNPRNADSDNDQLPDAWELQQ
CCCHHHHHHHCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
QLDPLLASGEVGTHGDPDADRLTNLAEYRNSTRPLLADSDGDGLDDGWEVQYTLDPLDGF
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEEECCCCCC
GVNGANGDPDSDGMNNLIELQRQTHPLQATYLVMLPLAQHSY
CCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEHHHCCC
>Mature Secondary Structure
MLRVKILLLAIIFLPIQSINQVNAQKIAEISRNTTNEQLDSDSDSLTNSWETNHQLNPYS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHCCCCCCCCCCCHH
ALGDDGAAGDPDHDGLSNANEQIHATNPRNPDSDADGLNDGWEVRYWLNPTSAIGDHGAT
HCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCHHHCCCCCCC
GDADRDGLTNQEELFSNTYPNNPDTDGDGLRDGWEVDHQFSPINTTGYHGSAGDVDTDNL
CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
NNFQEQAADTNPRHPDSDGDGLPDGLEIEHGSNPLDCDLDADADGLENQPELALATNPFN
HHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
SDSDGDGLPDGWEVAQQLNPLSVAGIHGANGDGDADGLGQLQEYLHQTNPHQADSDDDGL
CCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
LDGWEVQHHLNPLSSLAADGANADPDSDSLSNLAEQGFATNPRNADSDNDQLPDAWELQQ
CCCHHHHHHHCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
QLDPLLASGEVGTHGDPDADRLTNLAEYRNSTRPLLADSDGDGLDDGWEVQYTLDPLDGF
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEEECCCCCC
GVNGANGDPDSDGMNNLIELQRQTHPLQATYLVMLPLAQHSY
CCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA