| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159900335
Identifier: 159900335
GI number: 159900335
Start: 4792284
End: 4794206
Strand: Reverse
Name: 159900335
Synonym: Haur_3818
Alternate gene names: NA
Gene position: 4794206-4792284 (Counterclockwise)
Preceding gene: 159900336
Following gene: 159900334
Centisome position: 75.54
GC content: 54.97
Gene sequence:
>1923_bases ATGGCGTTGGGTCGATATGCTCGGCCATTGCTGCTGAGTAGCGTGGTTGCTGGGCTATTGTTATGGCTTGGTTGGCAGCG TTTAGTGCCATTCAACCTAGCAATTGGCGGCGATTTAGTCATTGGCGAGTCGGGTGAGCAATTTGCCTTGATGTACGATC AGCCCTATCTTGAGCATGTGCATGCCCCCGAACCGGCCACGGTTGATCTCACCACCACTGAAACCTATCGCTGGACCCAA CCCGAATCAGCGATAACTGTACCGTATCTCAATGGCAGTGCTCATATCGTTCGCTTGAGTTTAGCGCCGCCATCAGTGCC ACAAACCCCGTTTTTGCTGCAAGCCAATGGCGCAGCGGTTCGTACCGACCTGCCACCAGGCCAACGCACGTTGCATCTGT TCGCTCCTGCTAGTAGCGATGGCAGTTTAACCCTCGAATTACAAGCCCCAACCTACAATGCTAGCCCTGACCCACGTTTG CTGGGAGTGGTGTTGTATCGGATGCAGGCTCAACCGTTAAGCCACGACTGGTTTCTGCCATGGGCCGCTTGGATCGATTT GCTGCTCGTGGTAATTGTGGTTGGGCTTGGTGCTGCTTTGGCGGGTTTGGCTCCGTTGACTGCGGCTGGCGCGATCTTGG TGACCAGCAGCGGATTAAGTGTTTTGTTGGCAACAGTGCGGACGGTGATTACGCTCGATACTGGACAGTTGCGCACAATA AGCTTGGCTTGTTTGCTGGTGGCTTGGCTTGGGCGTTGGTTGGCTGAGCGCCGCCAAAACCCCGAAATCGCCTTAGTTGC TGGAATGACCGCCTTGGGTTTGGCGCTGCGCTTGATCGGCATTCGTCATCCCCAAACCAACTTCAGTGACCTCTTGTTGA ATGTTAATAATCTGGCGAGTGTGGGGAGCGGCGATTTACTATTTACCGAAGGTTTGCCTTGTGCCGCAGGTGCTGGCCGT TCGCCCTATCCTCCAGGCACGTATCTCATCACGCAACCGTTAAGTTTATTGCTGCCCGCCAGCATGAATCGCGGCATTTT GATTCAGATAGTTGGTGCTGTTGCCGATGCGTTGGTGATTCCGTTATTGTGGTGGCTGATTGATCGCACCCGTGACGCGC GAACGCCAGCACGGGCGGCGTTATGGGCTGCCAGCCTCTATCTTGCTCCCTTGGCGATGCTGCGGGCAATGGTGATTGGT GAATGGAGCAATGTGCTGGGCCAGGCAATTGCCATGCCAATCTTGGCGTGGCTGGGATTATGGCTTGCCAGCAACCAGCC GCGAGCATGGCAACCAGCCCTGATTGCTGGCTTGACGATCGCCGCCTTACAGCATAGTGGCACAATGTTATCGCTCGGGT TGTGGGGCGTGGCCTTGGCGGGATTCTTGGTTTGGCAAAAACAATGGCAAGTGCTGGGTCGCTTGGTGGTGGTGGGGACA AGTGCCGTTGTGTTGGCGGTTGGCTTGTATTACAGCAATTTCTTGGGCGATCCAACCCTGGCCAATAATGGCGTGATTTG CCCAGCGCCACGTCCGTTTGACCAAAAATTGTGGGGCGTAGTTTGGAACGATCTGATTGCGCTTGATGGGCGGGTTCCGG CATGGTTTTGGTTGGTGGGTTTAGGCGGTGCGTTTAGTTTGCGCCAAGGGTTATCACGGCTAGCAACTCCAATTTGGGCT TGGCTGGCAACCTTCGTGCTTTCGCTTAGCTCGTTGCTTTGGTCGGAGCAAACTGTGCGTTGGTGGCTGTTTATCTTGCC CGCCTTAGCTTTGAGTGGTGGCGTAGGTTTAGCGACTTTAGCCCAGCGTGGCCGTTTCGGGCGGGTAGCTGCGATTGCCG CGAGTTTATTCATCATTGCTGCTTCGTTAGCCCTCTGGACACGCTTTATTATCGAGTATCGCACGGGGGCGTTTGTTCCA TAA
Upstream 100 bases:
>100_bases CGAAACCTTGACCCTCGAAAAAATGTTTGGGGCAATTATTATCGTGGTTGGCCTGCTGTTGATCATTCGTGGTAGTGGAT TTTAAGGGGCGTTTGTGCAG
Downstream 100 bases:
>100_bases ATTATGAGGTTGACAACCAGTTGCATCGCGCCTTCACCCTAGCCCCTCGCCCGCCGCAGTGGGAGAGAGGTTGGGGGTGA GAGACTGTGATAATTGGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 640; Mature: 639
Protein sequence:
>640_residues MALGRYARPLLLSSVVAGLLLWLGWQRLVPFNLAIGGDLVIGESGEQFALMYDQPYLEHVHAPEPATVDLTTTETYRWTQ PESAITVPYLNGSAHIVRLSLAPPSVPQTPFLLQANGAAVRTDLPPGQRTLHLFAPASSDGSLTLELQAPTYNASPDPRL LGVVLYRMQAQPLSHDWFLPWAAWIDLLLVVIVVGLGAALAGLAPLTAAGAILVTSSGLSVLLATVRTVITLDTGQLRTI SLACLLVAWLGRWLAERRQNPEIALVAGMTALGLALRLIGIRHPQTNFSDLLLNVNNLASVGSGDLLFTEGLPCAAGAGR SPYPPGTYLITQPLSLLLPASMNRGILIQIVGAVADALVIPLLWWLIDRTRDARTPARAALWAASLYLAPLAMLRAMVIG EWSNVLGQAIAMPILAWLGLWLASNQPRAWQPALIAGLTIAALQHSGTMLSLGLWGVALAGFLVWQKQWQVLGRLVVVGT SAVVLAVGLYYSNFLGDPTLANNGVICPAPRPFDQKLWGVVWNDLIALDGRVPAWFWLVGLGGAFSLRQGLSRLATPIWA WLATFVLSLSSLLWSEQTVRWWLFILPALALSGGVGLATLAQRGRFGRVAAIAASLFIIAASLALWTRFIIEYRTGAFVP
Sequences:
>Translated_640_residues MALGRYARPLLLSSVVAGLLLWLGWQRLVPFNLAIGGDLVIGESGEQFALMYDQPYLEHVHAPEPATVDLTTTETYRWTQ PESAITVPYLNGSAHIVRLSLAPPSVPQTPFLLQANGAAVRTDLPPGQRTLHLFAPASSDGSLTLELQAPTYNASPDPRL LGVVLYRMQAQPLSHDWFLPWAAWIDLLLVVIVVGLGAALAGLAPLTAAGAILVTSSGLSVLLATVRTVITLDTGQLRTI SLACLLVAWLGRWLAERRQNPEIALVAGMTALGLALRLIGIRHPQTNFSDLLLNVNNLASVGSGDLLFTEGLPCAAGAGR SPYPPGTYLITQPLSLLLPASMNRGILIQIVGAVADALVIPLLWWLIDRTRDARTPARAALWAASLYLAPLAMLRAMVIG EWSNVLGQAIAMPILAWLGLWLASNQPRAWQPALIAGLTIAALQHSGTMLSLGLWGVALAGFLVWQKQWQVLGRLVVVGT SAVVLAVGLYYSNFLGDPTLANNGVICPAPRPFDQKLWGVVWNDLIALDGRVPAWFWLVGLGGAFSLRQGLSRLATPIWA WLATFVLSLSSLLWSEQTVRWWLFILPALALSGGVGLATLAQRGRFGRVAAIAASLFIIAASLALWTRFIIEYRTGAFVP >Mature_639_residues ALGRYARPLLLSSVVAGLLLWLGWQRLVPFNLAIGGDLVIGESGEQFALMYDQPYLEHVHAPEPATVDLTTTETYRWTQP ESAITVPYLNGSAHIVRLSLAPPSVPQTPFLLQANGAAVRTDLPPGQRTLHLFAPASSDGSLTLELQAPTYNASPDPRLL GVVLYRMQAQPLSHDWFLPWAAWIDLLLVVIVVGLGAALAGLAPLTAAGAILVTSSGLSVLLATVRTVITLDTGQLRTIS LACLLVAWLGRWLAERRQNPEIALVAGMTALGLALRLIGIRHPQTNFSDLLLNVNNLASVGSGDLLFTEGLPCAAGAGRS PYPPGTYLITQPLSLLLPASMNRGILIQIVGAVADALVIPLLWWLIDRTRDARTPARAALWAASLYLAPLAMLRAMVIGE WSNVLGQAIAMPILAWLGLWLASNQPRAWQPALIAGLTIAALQHSGTMLSLGLWGVALAGFLVWQKQWQVLGRLVVVGTS AVVLAVGLYYSNFLGDPTLANNGVICPAPRPFDQKLWGVVWNDLIALDGRVPAWFWLVGLGGAFSLRQGLSRLATPIWAW LATFVLSLSSLLWSEQTVRWWLFILPALALSGGVGLATLAQRGRFGRVAAIAASLFIIAASLALWTRFIIEYRTGAFVP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68797; Mature: 68665
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALGRYARPLLLSSVVAGLLLWLGWQRLVPFNLAIGGDLVIGESGEQFALMYDQPYLEHV CCCCHHHHHHHHHHHHHHHHHHHCHHHHCCEEEEECCEEEECCCCCEEEEEECCHHHHHC HAPEPATVDLTTTETYRWTQPESAITVPYLNGSAHIVRLSLAPPSVPQTPFLLQANGAAV CCCCCCEEEEEECCCEEECCCCCEEEEEEECCCEEEEEEEECCCCCCCCCEEEEECCCEE RTDLPPGQRTLHLFAPASSDGSLTLELQAPTYNASPDPRLLGVVLYRMQAQPLSHDWFLP ECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCH WAAWIDLLLVVIVVGLGAALAGLAPLTAAGAILVTSSGLSVLLATVRTVITLDTGQLRTI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHEEECCCCCHHH SLACLLVAWLGRWLAERRQNPEIALVAGMTALGLALRLIGIRHPQTNFSDLLLNVNNLAS HHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCCCHHHHHEEHHHHHC VGSGDLLFTEGLPCAAGAGRSPYPPGTYLITQPLSLLLPASMNRGILIQIVGAVADALVI CCCCCEEEECCCCCCCCCCCCCCCCCCEEHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHH PLLWWLIDRTRDARTPARAALWAASLYLAPLAMLRAMVIGEWSNVLGQAIAMPILAWLGL HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WLASNQPRAWQPALIAGLTIAALQHSGTMLSLGLWGVALAGFLVWQKQWQVLGRLVVVGT HHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHEECC SAVVLAVGLYYSNFLGDPTLANNGVICPAPRPFDQKLWGVVWNDLIALDGRVPAWFWLVG HHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHEECCCCCHHHHHHH LGGAFSLRQGLSRLATPIWAWLATFVLSLSSLLWSEQTVRWWLFILPALALSGGVGLATL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHH AQRGRFGRVAAIAASLFIIAASLALWTRFIIEYRTGAFVP HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure ALGRYARPLLLSSVVAGLLLWLGWQRLVPFNLAIGGDLVIGESGEQFALMYDQPYLEHV CCCHHHHHHHHHHHHHHHHHHHCHHHHCCEEEEECCEEEECCCCCEEEEEECCHHHHHC HAPEPATVDLTTTETYRWTQPESAITVPYLNGSAHIVRLSLAPPSVPQTPFLLQANGAAV CCCCCCEEEEEECCCEEECCCCCEEEEEEECCCEEEEEEEECCCCCCCCCEEEEECCCEE RTDLPPGQRTLHLFAPASSDGSLTLELQAPTYNASPDPRLLGVVLYRMQAQPLSHDWFLP ECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCH WAAWIDLLLVVIVVGLGAALAGLAPLTAAGAILVTSSGLSVLLATVRTVITLDTGQLRTI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHEEECCCCCHHH SLACLLVAWLGRWLAERRQNPEIALVAGMTALGLALRLIGIRHPQTNFSDLLLNVNNLAS HHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCCCHHHHHEEHHHHHC VGSGDLLFTEGLPCAAGAGRSPYPPGTYLITQPLSLLLPASMNRGILIQIVGAVADALVI CCCCCEEEECCCCCCCCCCCCCCCCCCEEHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHH PLLWWLIDRTRDARTPARAALWAASLYLAPLAMLRAMVIGEWSNVLGQAIAMPILAWLGL HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WLASNQPRAWQPALIAGLTIAALQHSGTMLSLGLWGVALAGFLVWQKQWQVLGRLVVVGT HHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHEECC SAVVLAVGLYYSNFLGDPTLANNGVICPAPRPFDQKLWGVVWNDLIALDGRVPAWFWLVG HHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHEECCCCCHHHHHHH LGGAFSLRQGLSRLATPIWAWLATFVLSLSSLLWSEQTVRWWLFILPALALSGGVGLATL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHH AQRGRFGRVAAIAASLFIIAASLALWTRFIIEYRTGAFVP HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA