| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159900328
Identifier: 159900328
GI number: 159900328
Start: 4783488
End: 4784678
Strand: Direct
Name: 159900328
Synonym: Haur_3811
Alternate gene names: NA
Gene position: 4783488-4784678 (Clockwise)
Preceding gene: 159900327
Following gene: 159900340
Centisome position: 75.37
GC content: 55.08
Gene sequence:
>1191_bases ATGAGTGCCGAAATCTATCAACCAACTGCTGGACGTGCCCGCGAGGCTTTGACCAAAACTGCTCCGCCAACGGCCAACAA GGAATGGTTCAGTCCAGTTAGCCAACGTCAGCGCCGCATCGCCCGCCCATGGGAAGGCGGCCATAGTTTGGCGTGGGTTG CTTGGCTGGTCGCAGCCTTGGCATGTATCGGCCAAACCGATCAACCGCTCTATTTGATTTTGATTGGGGCGGTGACGTTG TTGGTTTGGCAGAGTTGCGCCTTGGATAGCCCGTTTCAGGCGGTGGTACGGGTTATGTTGCAACTTGGGGCGGTGTTGTT TGGCTTTAATTTGCTGTTTAGCGTGATTACCGCCAGTGTGCTGCGCGGCCAAACGGTGCTGTTTGAGTTGCCAAGTTGGC GCTTGCCGCAACTGCTTGGTGGCATTCAACTGGGCGGAATTATTACCGCTGAGCAATTAGCAAGTGGTGCAGTGCGTGGG CTACGTTTGTGGACATTGTTGCTGGTGGTTGGTACATTCAACGCCTGTGTCAATCATTATCGCTTGTTACGGCGCACGCC CCAAGGCTTTTTTCAATTGGGCTTGGTGCTAACCATTGGCTTGGCGTTTGTGCCCCAAACCTTGCTACGCTTACGGGCAA TTCGTGATGCCCAACGCTTGCGCGGCCATCGCTTTCGTTCGTGGCGTGATGCATTGCCCTTGTTTGTGCCCTTGCTCAGC GGCGGCCTAGAGCAATCGCTGACCCTAGCCGAAGCCATGGAAGCCCGTGGGTTTGGTCGCGCTCAACGTGGTCAAATCGC CGCCTACTGGACATGGCTGGGTTTGGCGGGCGTGTTGCTGGTCTGTGCTGGCATTTGGATGCTGTTTTTCTATGCTAGAG CCAGCTTGGGCGCAATGGTCGCTTGGGTATTATTGGCACTTGGCTTGATTGCCATGCTCAGTTATTGGTGGCAAGCCAAT CGGCTGATTGTGCGCACCAGTTATCGCCGCGAACGCTGGACATTCCGCGCTACGGTCATAACGCTTTTGGCGCTGGCTGC GCCGCTAGGGTTTTGGCTAGCACAGCGCTCAGGCAGTGCCATGGTTTATCGCATTTACCCCAAATTAGCTTGGCCACCAT TTGAGCCATTGCTGACCCTGGCAATTTTGGCCTTGCTTGCGCCATTATTGTTTAAGTCTAGCGCTCGCTAA
Upstream 100 bases:
>100_bases CCAGCAGTAGCGGCTCAGCAATTCCGATCAATTACTTGATTTTTGGCTTGATTTTGCTGGCCTTGGCTGGCGGCGGCATT TGGAAGCGCCAGAGCAAGCG
Downstream 100 bases:
>100_bases ATGAAACAATCGCCTGCAATACCGCCGGATCATTCGGAATCGTGTATTGGGTCCAATCGTCTTCGACCACAATATTTGGC TGCACACCTTTGGTTTCAAA
Product: cobalt transport protein
Products: NA
Alternate protein names: ABC Transporter-Associated Permease; Cobalt Transporter; Permease Component Of ABC-Type Cobalt Transport System
Number of amino acids: Translated: 396; Mature: 395
Protein sequence:
>396_residues MSAEIYQPTAGRAREALTKTAPPTANKEWFSPVSQRQRRIARPWEGGHSLAWVAWLVAALACIGQTDQPLYLILIGAVTL LVWQSCALDSPFQAVVRVMLQLGAVLFGFNLLFSVITASVLRGQTVLFELPSWRLPQLLGGIQLGGIITAEQLASGAVRG LRLWTLLLVVGTFNACVNHYRLLRRTPQGFFQLGLVLTIGLAFVPQTLLRLRAIRDAQRLRGHRFRSWRDALPLFVPLLS GGLEQSLTLAEAMEARGFGRAQRGQIAAYWTWLGLAGVLLVCAGIWMLFFYARASLGAMVAWVLLALGLIAMLSYWWQAN RLIVRTSYRRERWTFRATVITLLALAAPLGFWLAQRSGSAMVYRIYPKLAWPPFEPLLTLAILALLAPLLFKSSAR
Sequences:
>Translated_396_residues MSAEIYQPTAGRAREALTKTAPPTANKEWFSPVSQRQRRIARPWEGGHSLAWVAWLVAALACIGQTDQPLYLILIGAVTL LVWQSCALDSPFQAVVRVMLQLGAVLFGFNLLFSVITASVLRGQTVLFELPSWRLPQLLGGIQLGGIITAEQLASGAVRG LRLWTLLLVVGTFNACVNHYRLLRRTPQGFFQLGLVLTIGLAFVPQTLLRLRAIRDAQRLRGHRFRSWRDALPLFVPLLS GGLEQSLTLAEAMEARGFGRAQRGQIAAYWTWLGLAGVLLVCAGIWMLFFYARASLGAMVAWVLLALGLIAMLSYWWQAN RLIVRTSYRRERWTFRATVITLLALAAPLGFWLAQRSGSAMVYRIYPKLAWPPFEPLLTLAILALLAPLLFKSSAR >Mature_395_residues SAEIYQPTAGRAREALTKTAPPTANKEWFSPVSQRQRRIARPWEGGHSLAWVAWLVAALACIGQTDQPLYLILIGAVTLL VWQSCALDSPFQAVVRVMLQLGAVLFGFNLLFSVITASVLRGQTVLFELPSWRLPQLLGGIQLGGIITAEQLASGAVRGL RLWTLLLVVGTFNACVNHYRLLRRTPQGFFQLGLVLTIGLAFVPQTLLRLRAIRDAQRLRGHRFRSWRDALPLFVPLLSG GLEQSLTLAEAMEARGFGRAQRGQIAAYWTWLGLAGVLLVCAGIWMLFFYARASLGAMVAWVLLALGLIAMLSYWWQANR LIVRTSYRRERWTFRATVITLLALAAPLGFWLAQRSGSAMVYRIYPKLAWPPFEPLLTLAILALLAPLLFKSSAR
Specific function: Unknown
COG id: COG0619
COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44065; Mature: 43934
Theoretical pI: Translated: 11.86; Mature: 11.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAEIYQPTAGRAREALTKTAPPTANKEWFSPVSQRQRRIARPWEGGHSLAWVAWLVAAL CCCCCCCCCCHHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHH ACIGQTDQPLYLILIGAVTLLVWQSCALDSPFQAVVRVMLQLGAVLFGFNLLFSVITASV HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRGQTVLFELPSWRLPQLLGGIQLGGIITAEQLASGAVRGLRLWTLLLVVGTFNACVNHY HCCCEEEEECCCCCHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLLRRTPQGFFQLGLVLTIGLAFVPQTLLRLRAIRDAQRLRGHRFRSWRDALPLFVPLLS HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GGLEQSLTLAEAMEARGFGRAQRGQIAAYWTWLGLAGVLLVCAGIWMLFFYARASLGAMV CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AWVLLALGLIAMLSYWWQANRLIVRTSYRRERWTFRATVITLLALAAPLGFWLAQRSGSA HHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE MVYRIYPKLAWPPFEPLLTLAILALLAPLLFKSSAR EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SAEIYQPTAGRAREALTKTAPPTANKEWFSPVSQRQRRIARPWEGGHSLAWVAWLVAAL CCCCCCCCCHHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHH ACIGQTDQPLYLILIGAVTLLVWQSCALDSPFQAVVRVMLQLGAVLFGFNLLFSVITASV HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRGQTVLFELPSWRLPQLLGGIQLGGIITAEQLASGAVRGLRLWTLLLVVGTFNACVNHY HCCCEEEEECCCCCHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLLRRTPQGFFQLGLVLTIGLAFVPQTLLRLRAIRDAQRLRGHRFRSWRDALPLFVPLLS HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GGLEQSLTLAEAMEARGFGRAQRGQIAAYWTWLGLAGVLLVCAGIWMLFFYARASLGAMV CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AWVLLALGLIAMLSYWWQANRLIVRTSYRRERWTFRATVITLLALAAPLGFWLAQRSGSA HHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE MVYRIYPKLAWPPFEPLLTLAILALLAPLLFKSSAR EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA