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The map label for this gene is recF

Identifier: 159900239

GI number: 159900239

Start: 4682500

End: 4683657

Strand: Reverse

Name: recF

Synonym: Haur_3722

Alternate gene names: 159900239

Gene position: 4683657-4682500 (Counterclockwise)

Preceding gene: 159900241

Following gene: 159900238

Centisome position: 73.8

GC content: 52.68

Gene sequence:

>1158_bases
ATGTATGTTTCTCGCCTGCAACTCCAAGACTTTCGAATTTATCGCAGCCTCAATTTAGCCTTGCCTCCAGGCGTGTGTTT
GTTCTATGGGGCCAATGCAGCGGGCAAAACAACGATTCTGGAAGCATTATACTATTTGGCTACAACTCGCTCTTTACGGG
CCTCGGTTGAACGTGAATTAATTGCCCTTGAAGCAGCAGGCGATCTTGGCTTACCGCCATTTGCTCGCTTGGCCGCCAGC
TTGCAACCGCAACCAGAGGCCGAAATGCAAACGATTGAAATTGTGCTGCAACGCAAATTTGGCGCTGATGGCGATTTAGC
CCCTACCACCAGCAAAACCATTCGGATCAATAAAATAGCTCGGCGAGCGCTCGATCTGATTGGTCAGTTACGGGTGGTGA
TGTTCGCGCCGCAAGATTTAGAGTTAGTCACGGGTGCGCCTGCTGAGCGGCGACGCTATCTCGATGTCACGCTTTCGCAG
ATCGATGGCCGTTATGTTCGCGCCCTTTCGCGCTACAACCAAGTGCTAACCCAACGCAACGGTCTATTGCGAACCAGTCG
TGAGCGTGGTCGCGCTGCCAGCGAACAAGATCTAGCATTTTGGGATGAGGAGCTAGCCAAAGCTGGGGTGTATGTGCTGC
GCGAACGTCGCCGCGCCGTCACCACGCTTGACCAGCTTGCGCAACGCTTGTATGCCGAGATTAGCGGCAGCGATTTAGAT
TTACGTTTGAACTACTTAGATACAACGCCTGCTCACGATGTGCCAAGTTTTCAAGCAGCCTTGAAGCAGCTACGTCGTGA
AGAGCGCGAACGTGGCGTGACGTTAATCGGCCCACATCGCGATGATCTTTCGATTCAATTGGCGGAGCGTGAAGTCGGCA
GCTTTGGCTCGCGTGGCCAGCAACGAGCCTCGACCTTGGCTTTACGGTTGGCCGAAGCCGAATTGATGCATAGTCGCACG
GGCGATCGGCCTGTTCTGCTGCTCGATGATTTGCTTTCAGAGCTTGATCAAAAACGCCGCGAACATCTATTGACCACAAT
TGTGCGTCCCCAGCAACAAACCCTGATCACTGCTACTGATCTTGATGATTTTTCGCCTAATTTTCTGAGCCAAATCACCC
GAATGCATGTTGATCATGGCCTGATCTTCCCGGCGTGA

Upstream 100 bases:

>100_bases
GCGGATTCCTTGCCTAAAAAGGTGAATTTGACTTTTTATTAATCAGGTTTGGGTTTAAAATAGCTCTATTGTTTGCATTT
TAGCGTTTGGGTGACCGTGT

Downstream 100 bases:

>100_bases
TTGGGTTTTTAACCACGAAGAACATGAATGCTTTAATTTGTTAGCCACAGATTCACACAGATTTGAATGATTTGGATGTT
CTATGCTCTGTGTTCCTTGT

Product: DNA replication and repair protein RecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MYVSRLQLQDFRIYRSLNLALPPGVCLFYGANAAGKTTILEALYYLATTRSLRASVERELIALEAAGDLGLPPFARLAAS
LQPQPEAEMQTIEIVLQRKFGADGDLAPTTSKTIRINKIARRALDLIGQLRVVMFAPQDLELVTGAPAERRRYLDVTLSQ
IDGRYVRALSRYNQVLTQRNGLLRTSRERGRAASEQDLAFWDEELAKAGVYVLRERRRAVTTLDQLAQRLYAEISGSDLD
LRLNYLDTTPAHDVPSFQAALKQLRREERERGVTLIGPHRDDLSIQLAEREVGSFGSRGQQRASTLALRLAEAELMHSRT
GDRPVLLLDDLLSELDQKRREHLLTTIVRPQQQTLITATDLDDFSPNFLSQITRMHVDHGLIFPA

Sequences:

>Translated_385_residues
MYVSRLQLQDFRIYRSLNLALPPGVCLFYGANAAGKTTILEALYYLATTRSLRASVERELIALEAAGDLGLPPFARLAAS
LQPQPEAEMQTIEIVLQRKFGADGDLAPTTSKTIRINKIARRALDLIGQLRVVMFAPQDLELVTGAPAERRRYLDVTLSQ
IDGRYVRALSRYNQVLTQRNGLLRTSRERGRAASEQDLAFWDEELAKAGVYVLRERRRAVTTLDQLAQRLYAEISGSDLD
LRLNYLDTTPAHDVPSFQAALKQLRREERERGVTLIGPHRDDLSIQLAEREVGSFGSRGQQRASTLALRLAEAELMHSRT
GDRPVLLLDDLLSELDQKRREHLLTTIVRPQQQTLITATDLDDFSPNFLSQITRMHVDHGLIFPA
>Mature_385_residues
MYVSRLQLQDFRIYRSLNLALPPGVCLFYGANAAGKTTILEALYYLATTRSLRASVERELIALEAAGDLGLPPFARLAAS
LQPQPEAEMQTIEIVLQRKFGADGDLAPTTSKTIRINKIARRALDLIGQLRVVMFAPQDLELVTGAPAERRRYLDVTLSQ
IDGRYVRALSRYNQVLTQRNGLLRTSRERGRAASEQDLAFWDEELAKAGVYVLRERRRAVTTLDQLAQRLYAEISGSDLD
LRLNYLDTTPAHDVPSFQAALKQLRREERERGVTLIGPHRDDLSIQLAEREVGSFGSRGQQRASTLALRLAEAELMHSRT
GDRPVLLLDDLLSELDQKRREHLLTTIVRPQQQTLITATDLDDFSPNFLSQITRMHVDHGLIFPA

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECF_HERA2 (A9B775)

Other databases:

- EMBL:   CP000875
- RefSeq:   YP_001546486.1
- ProteinModelPortal:   A9B775
- SMR:   A9B775
- GeneID:   5735586
- GenomeReviews:   CP000875_GR
- KEGG:   hau:Haur_3722
- HOGENOM:   HBG645124
- OMA:   GQQRTLV
- ProtClustDB:   CLSK974188
- BioCyc:   HAUR316274:HAUR_3722-MONOMER
- GO:   GO:0005694
- GO:   GO:0005737
- HAMAP:   MF_00365
- InterPro:   IPR003593
- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395
- SMART:   SM00382
- TIGRFAMs:   TIGR00611

Pfam domain/function: PF02463 SMC_N

EC number: NA

Molecular weight: Translated: 43368; Mature: 43368

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS00617 RECF_1; PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVSRLQLQDFRIYRSLNLALPPGVCLFYGANAAGKTTILEALYYLATTRSLRASVEREL
CCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IALEAAGDLGLPPFARLAASLQPQPEAEMQTIEIVLQRKFGADGDLAPTTSKTIRINKIA
EEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHH
RRALDLIGQLRVVMFAPQDLELVTGAPAERRRYLDVTLSQIDGRYVRALSRYNQVLTQRN
HHHHHHHHHHHEEEECCCCCEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
GLLRTSRERGRAASEQDLAFWDEELAKAGVYVLRERRRAVTTLDQLAQRLYAEISGSDLD
CCHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
LRLNYLDTTPAHDVPSFQAALKQLRREERERGVTLIGPHRDDLSIQLAEREVGSFGSRGQ
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEHHHHHCCCCCCHH
QRASTLALRLAEAELMHSRTGDRPVLLLDDLLSELDQKRREHLLTTIVRPQQQTLITATD
HHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEEC
LDDFSPNFLSQITRMHVDHGLIFPA
CCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MYVSRLQLQDFRIYRSLNLALPPGVCLFYGANAAGKTTILEALYYLATTRSLRASVEREL
CCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IALEAAGDLGLPPFARLAASLQPQPEAEMQTIEIVLQRKFGADGDLAPTTSKTIRINKIA
EEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHH
RRALDLIGQLRVVMFAPQDLELVTGAPAERRRYLDVTLSQIDGRYVRALSRYNQVLTQRN
HHHHHHHHHHHEEEECCCCCEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
GLLRTSRERGRAASEQDLAFWDEELAKAGVYVLRERRRAVTTLDQLAQRLYAEISGSDLD
CCHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
LRLNYLDTTPAHDVPSFQAALKQLRREERERGVTLIGPHRDDLSIQLAEREVGSFGSRGQ
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEHHHHHCCCCCCHH
QRASTLALRLAEAELMHSRTGDRPVLLLDDLLSELDQKRREHLLTTIVRPQQQTLITATD
HHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEEC
LDDFSPNFLSQITRMHVDHGLIFPA
CCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA